-
Hello! Hope you are all doing well! For the output alignments (nucleotide.fasta, codon.fasta, and protein.fasta), what gene projections/orthology classes are included here? By that I mean, what does T…
-
**Submitting author:** @nvanalfen (Nicholas Van Alfen)
**Repository:** https://github.com/nvanalfen/halotools
**Branch with paper.md** (empty if default branch): paper
**Version:** v0.9
**Editor:** @i…
-
Hello! I am trying to use dotPlotly to compare a PacBio long read de novo assembly (produced with PacBio's assembler IPA) to a reference genome to visualize structural variations. I aligned the assemb…
-
#1825 added support for alignments, which passed through arguments for supporting missing data to the haplotypes method. However, the initial implementation was wrong. Consider the following example:
…
-
Thanks for this project, it's really useful.
It would be even more useful if you could do alignments in batches. This could make doing lots of alignments on a GPU much faster.
-
-
- CDS +-50 nt
- CM start +- 30 nt
-
Hi!
We finally have time to reopen [work on guided alignments for Sockeye 3](https://github.com/awslabs/sockeye/issues/1054)
To recap: guided alignments are handy for formatted document translation…
-
Hi,
I'm trying to run ngsLCA to filtering out alignments with exactly 2 edit distance. So I used -editdistmin 2 -editdistmax 2. But in the result file, I see: For example 1 read that has 10 alignmen…
-
Dear Authors,
thank you very much for providing the pipeline! I would like to run the pipeline on different genomes together to compute whole genome alignment of different species to use them afte…