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Hi,
I'm working on alternative polyadenylation analysis on transcripts. We would like to calculate expression on different alternative UTRs sequences of the same gene set. As some UTRs are very sho…
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Neither of these complexes have a defined function (yet). But they are highly conserved from yeast to humans to plants so I thought it might warrant composition-specific terms here.
1.
Name: LSM1…
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Currently alternative polyadenylation/alt-TSS events are specified by two exons with the same inner coordinate (splice site) but different outer coordinates. The outer coordinates can differ by as li…
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I _just_ noticed this; this is a problem for prokaryotes. Many prokaryotic mRNAs are not polyadenylated. I don't know why the poly(A) RNA binding term is in the ontology here, anyway - as far as I c…
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pre-mRNA cleavage factor activity
looks like a process term
see def 'Any activity required for the process
of mRNA cleavage'
Reported by: ValWood
Original Ticket: "geneontology/ontology-request…
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RNA processing: "Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules."
. % mRNA processing: "Any process involved in the conversion of…
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Hello,
I am interesting in using isoscm for some survival analyses. We have RNA-seq data from tumor samples, where we would like to get a quantitative measurement of APA (3'UTR-shortening) on a gene…
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Hi,
We have been working on adding some new terms to represent RNA
surveillance, particularly the polyadenylation-dependent forms that
occur in eukaryotic nuclei. We've tried to add terms to cover th…
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Hi
Is it possible to have immunoglobulin secretion as a child of
protein secretion (GO:0009306).
pos Def:
The regulated release of immunoglobulins from a plasma/mature B-cell.
(pos synonyms: anti…