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Fix the old scripts that need to be updated with new FIBERS 2.0 data.
https://github.com/lgragert/srtr-impute-pubsaf2306/blob/main/FIBERS_AgMM_summary_table.py
https://github.com/lgragert/srtr-impu…
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Hello,
First off, great job on this publication. I really enjoyed reading the paper.
I've been trying to run the model myself, however I'm having trouble understanding the structure of the pdb f…
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Just noticed that the `genome_stats.tsv` is described to have "the required information for the MIMAG requirements". But as far as I can see, it includes a total count of all genes identified as tRNAs…
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The Protein Translation exercise incorrectly uses the word "protein" in place of "amino acid" in the codon mapping table in the description, and seems to use "protein" somewhat vaguely in the test dat…
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I recently read the pepquery2 paper, I like many of the analyses you performed in the discussion to show its versatility, but I was left wondering about step4 (the shuffling of peptides).
If I unde…
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I tested on the test dataset of nextneopi (https://github.com/icbi-lab/nextNEOpi). I has a similar session for using the arriba to get the fusion genes. From those fusion genes, it can get the peptide…
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This is an enhancement request to support N2-methyltryptophan, as currently supported by ChemDraw. As you know, for acyclic standard amino acids, N2 may be used to name the "amino" group; but for cyc…
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Hi,
Can you please teach us a bit about how to navigate through the resulting output? I am aware that each column is reporting a different aspect of an immunological assessment, but is there an eas…
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1. when I query a mutation without capital letters, can it convert the amino acids to capital letters when it shows the output?
2. ~For the leading sentences (when they are relevant) in mutation effe…
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Only custom mod or custom amino acid,
Not possible for custom mod on custom amino acids.