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Hello, I need the sequence from part of my Blastp hits. The full_sseq option from custom outfmt 6 returns the sequence with variable amino acids.
For example:
MIRSRSRATRGVRMKTFKATMTTAMLALXXXXXXXXXX…
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I am getting the following error when trying to predict protein complexes. It only happens sometimes, especially when trying to sample a lot.
Featurizer failed on {file_name} with error index 45465…
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I have constructed a germline BCR and its corresponding vj chains in amino acids.
I am wondering if there is a way I can process w/ gctree.
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Failed at mkconfig step
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Thank you,
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Chai-1 is limited to 2048 tokens (token=canonical AA or atom), and the main reason is high memory consumption.
We received several requests to support larger crop sizes, but it requires _significa…
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Hello.
Thanks for this awesome work.
I would like to run side chain optimization routines for a peptide with non-canonical amino acids. Is there a way to add such residues in the rotamer library?
I…
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Hi,
I would like to infer a model on a generated data set where "proteins" have only 2 states available for each site. For example :
```
MSA = [ [ 1, 0, 1, ... , 0, 1, 0],
......,
…
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Hi,
I successfully ran the finetuning code using config/pretrain/saprot.py and config/Thermostability/saprot.py
Then I newly got these questions
I would really appreciate it if you could answer…
sj584 updated
2 weeks ago
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How can we retrieve the amino acids comprising the active site? Is there a method to obtain information on the amino acids in the binding site?
Thank you
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http://orthomolecular.org/nutrients/proteins.shtml
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We are benchmarking folding methods on predicting structures of proteins containing unnatural amino acids. We saw that you mentioned 'prediction for unnatural amino acids is coming soon' on Github, so…