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While running following command
nextflow run main_AMR++.nf -profile conda
N E X T F L O W ~ version 24.04.3
Launching `main_AMR++.nf` [elegant_gauss] DSL2 - revision: f6bfe39b99
A M R …
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Dear all,
thank you for the nice package. However, unfortunatley i have an issue with the tensor2 = c2c.analysis.run_tensor_cell2cell_pipeline(..) function I tried now many times to run it but it alw…
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### Duplicates
- [X] I have searched the existing issues
### Summary 💡
Need to put in place SonarCloud project so that use it in our pipelines
Free for all open-source projects as stated in…
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### Description
We want quality gateways as a part of our journey towards CD.
We need to investigate if regression tests could be used as quality gates for our deployments.
### In scope
_N…
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I maintain a handful of Jenkinsfiles that use classes as a way to maintain structure. All such Jenkinsfiles are scripted pipelines and _not_ using the declarative API. These classes need to be declare…
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I am getting the following error while running the test script for CADD 1.7:
```
$ ./CADD.sh -a -g GRCh38 -o ~/tmp/cadd/output_inclAnno_GRCh37.tsv.gz ./test/input.vcf
CADD-v1.7 (c) University of …
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### Jenkins and plugins versions report
Environment
```text
Jenkins: 2.462.2
OS: Linux - 5.15.0-1026-aws
Java: 17.0.12 - Ubuntu (OpenJDK 64-Bit Server VM)
---
PrioritySorter:5.1.0
…
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https://gdc.cancer.gov/about-data/gdc-data-processing
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How convenient is protocols.io for a data analysis pipeline, which consists of:
* pure code
* mixture of code and GUIs