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### Description of the bug
When running Sarek in `--profile awsbatch` using s3 as work and results folder, the Sarek-oncomplete mail-out [activated here](https://github.com/nf-core/sarek/blob/c87f4…
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Environment: 2.10.4
scheduler = awsbatch
Is there a new Python 3.6 pcluster AMI for 2.10.4 in US-EAST-1 ?
$ awsbstat
/usr/lib/python2.7/site-packages/boto3/compat.py:86: PythonDeprecationWar…
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## Bug report
(Please follow this template replacing the text between parentheses with the requested information)
### Expected behavior and actual behavior
Trying to run this container in a …
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There's an issue open for this but it is specifically for awsbatch whereas I need this for Slurm. Our own proprietary "Slurm with AWS" implementation had this so we've gone backwards a bit in that res…
zbarr updated
3 weeks ago
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**Environment:**
- pcluster version: 2.7.0
- Configuration file (~/.parallelcluster/config):
```
[aws]
aws_region_name = us-east-2
[global]
cluster_template = default
update_check = true
…
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### Bug description
When the scheduler of the cluster is awsbatch and a [Multi-node Parallel (MNP)](https://docs.aws.amazon.com/batch/latest/userguide/multi-node-parallel-jobs.html) job is submitte…
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## Bug report
When specifying the `shm-size` containerOption, Docker is expecting the number of bytes. However, I when the executor is AWS Batch, I believe Nextflow is expecting this to be the num…
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When trying to use high level API like this one:
```julia
@service Timestream_Write
Timestream_Write.list_databases()
```
It will fail with:
```
ERROR: AWS.AWSExceptions.AWSException: UnknownOp…
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We now have conda forge packages for unionml, flytekit, and flyteidl:
- unionml: https://github.com/conda-forge/unionml-feedstock
- flytekit: https://github.com/conda-forge/flytekit-feedstock
- f…
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Hi everyone,
I have received this error several times when running bcbio with a PON for mutect. It looks like too many instances are trying to access this file? I'm not sure what is causing this or…