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> callfusion(CaseBam='/data/NGS/Ctdna-Data-Analysis/106.DataAnalysis/20200401_H33JCDSXY-P101SC18120363-01/analysis2/intermediate_bam/HO0327-GW9T0137B05_L2.raw_data_mapped.bam',TestI
D='GW9T0137B05',O…
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Hello! l installed hic-pro by conda , but the step "Pairing of R1 and R2 tags ..." is always wrong, can you tell me how to solve this problem?
Thank you！
**the log**
Run HiC-Pro 3.1.0
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Dear all,
This is not really an issue about the Strelka2 variant caller, but more a question about a particular statistic used in the algorithm:
I simply run Strelka2 (somatic mode) on a TCGA WE…
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@jbeezley @subdavis @jeffbaumes @wdduncan @dwinston @dehays
Tagging you all as I'm not sure how you all will want to implement this.
I'm including tables that map some of the terms on the website…
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Hi, my understanding is that the old way of calculating thetas using (angsd -doThetas) was recently removed and it is recommended to only use realSFS saf2theta instead.
I’m trying to estimate theta…
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GATK is throwing an error because it complains about ReadGroups. This [BioStar](https://www.biostars.org/p/115819) might have some solutions on how to overcome this.
``` java
root@2f68d7ec1b12:/home…
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Effectively the same as `c4t-analyse` currently does for analyses (though I want to split the analysis and report stage eventually), but for `stats.json`.
Initially we need only one mode for this (…
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I use your source code and build the environment in Docker I built.
Factera and GeneFusion could run normally, and, I have installed the environment for JuLi sucessfully.
However, I cannot run …
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For three different assemblies, the output from YAHS is exactly the same as the input assembly. I used the Arima-HiC Mapping Pipeline to map my HiC reads to my assemblies. Assemblies are either HiFi-o…