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Error reported by Krithika & Ying.
`snakemake.log`
```
Error executing rule rnaseq_multiqc on cluster (jobid: 324, external: 12899399, jobscript: /vf/users/CCRCCDI/analysis/ccrtegs4/renee_2023112…
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**Describe the bug**
Process `NFCORE_MYCOSNP:MYCOSNP:BWA_PREPROCESS:QUALIMAP_BAMQC (SAMPLE)` terminated with an error exit status (137)
command to run nextflow:
./nextflow run mycosnp-nf/main.nf …
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In my end, v1.4 has been working but v1.5 not work. The error of v1.5 is below:
executor > local (21)
[7f/bfa9f3] process > NFCORE_MYCOSNP:MYCOSNP:INPUT_CHECK:LANE_MERGE (ERR2172267) [100%] 3 of 3…
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executor > local (21)
[7f/bfa9f3] process > NFCORE_MYCOSNP:MYCOSNP:INPUT_CHECK:LANE_MERGE (ERR2172267) [100%] 3 of 3 ✔
[2b/4e2547] process > NFCORE_MYCOSNP:MYCOSNP:BWA_REFERENCE:INPUT_PRO…
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Errors-I
=========
"bco_id","property_path","error","error_category"
"ARG_000013","io_domain.output_subdomain.0.uri.filename","invalid-file-name:'ObservableHQ on data 93, data 92, and others'","WARNIN…
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GitHub actions triggers two system tests when I push a commit to PR - one due to commit action and the other due to PR activity. For some reason, one of them goes to completion while the other gets ca…
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I am still waiting for its installation:
My pipeline is completely blocked at this step, waiting for Qualimap installation.
I am using the latest version of snakemake and the stable version o…
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All previous process run without error.
I noticed that at each retry number of threads and memory is increased.
Any workaround is accepted.
have you thought of using biobambam2 which seems more eff…
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We have experienced running out of memory failures with small BAM files.
I was able to reproduce it using [bam_test.zip](https://github.com/brentp/mosdepth/files/11434883/del_sub.zip) file, which …
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### Description of bug
We've noticed a few problems with the `mosdepth` module of MultiQC.
- Some samples (very few) have partial dropouts. In the general stats table, they'll have a value for "Me…