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CDCgov
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mycosnp-nf
CDCgov/mycosnp-nf
Apache License 2.0
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Tower mods
#124
jwarnn
closed
1 month ago
1
Addition of Genome Fraction to qc report
#123
cjjossart
closed
1 month ago
2
Remove snpEff logging
#122
zmudge3
closed
2 months ago
0
SNPEFF delivers data to a third party
#121
slsevilla
closed
2 months ago
2
fix: address snpeff security issue
#120
slsevilla
closed
2 months ago
1
Pre mycosnp alt
#119
DOH-JDJ0303
closed
2 months ago
0
question regarding --add_vcf_file
#118
mstagliamonte
closed
2 months ago
2
GenomicsDBimport for large sample sizes
#117
arunbodd
opened
3 months ago
1
Expanding the support for Nanopore sequencing data
#116
llk578496
closed
2 months ago
1
FAQCs repeatedly failing with Exit Code 1 - causing pipeline to fail
#115
snallani-msdh
closed
2 months ago
2
Sourmash ANI additions to pre_mycosnp.nf
#114
hseabolt
closed
8 months ago
0
added error message for .csv files (https://github.com/CDCgov/mycosnp…
#113
DOH-JDJ0303
closed
10 months ago
1
add fks1_hs3 and change output name for snpeffr
#112
mrajeev08
closed
10 months ago
1
v1.4 works, but v1.5 not work
#111
ybdong919
closed
10 months ago
3
NFCORE_MYCOSNP:MYCOSNP:FASTQC_RAW (ERR2172266) fail
#110
ybdong919
closed
10 months ago
1
add tmp/empty
#109
urbagal
closed
1 year ago
0
merging PR #103
#108
urbagal
closed
1 year ago
0
Modifications made to run on NF Tower
#107
kyleoconnell
opened
1 year ago
0
add 'empty' file to retain tmp dir
#106
dwinter
closed
1 year ago
1
Add genome fraction to the QC report
#105
DOH-JDJ0303
closed
3 weeks ago
2
Tower functionality
#104
DOH-JDJ0303
closed
1 year ago
1
SnpEff cloud patch
#103
DOH-JDJ0303
closed
1 year ago
0
SnpEff config file is passed verbatim (not linked in work directory)
#102
DOH-JDJ0303
opened
1 year ago
3
Create mycosnp-nf.sh
#101
jessres
closed
1 year ago
0
Updated container fand shebang line for python3 module issue
#100
hseabolt
closed
1 year ago
0
Dev
#99
hseabolt
closed
1 year ago
1
Dev hs
#98
hseabolt
closed
1 year ago
1
Update modules.config to Fix FastQC
#97
jwarnn
closed
1 year ago
1
Updates to schema, config, and downsample_rate.nf module
#96
hseabolt
closed
1 year ago
0
NFCORE_MYCOSNP:MYCOSNP:BWA_PREPROCESS:QUALIMAP_BAMQC
#95
PalanikumarPalanichamy
closed
1 year ago
1
Downrate Default Behavior Update
#94
jwarnn
closed
1 year ago
1
Snpeff tool integration - Making it optional to run within the pipeline.
#93
arunbodd
closed
1 year ago
0
QuickSNP addition
#92
cjjossart
closed
1 year ago
0
#81 - Standardize scripts to be executable
#91
cjjossart
closed
1 year ago
0
Urgent: downsample_rate.nf incorrectly counts total basepairs and reads
#90
rpetit3
closed
1 year ago
1
Use consistent versions across pipeline
#89
rpetit3
closed
1 year ago
0
Dev
#88
arunbodd
closed
1 year ago
0
Version 1.4 release lists the version as 1.3
#87
rpetit3
closed
1 year ago
0
Multiple versions of programs in pipeline
#86
rpetit3
opened
1 year ago
0
running this in Google Cloud?
#85
mjpworth
closed
1 year ago
2
Isssue with seqtk sample module and error code 137
#84
elasekness
closed
1 year ago
0
Default params.rate runs unneeded processes
#83
jwarnn
closed
1 year ago
4
Add snpEff sub-workflow for variant annotation
#82
hseabolt
closed
1 year ago
2
changes to the paths of custom scripts in local modules for cloud computing
#81
cjjossart
opened
2 years ago
0
sync `nextflow.config` and `nextflow_schema.json`
#80
rpetit3
closed
2 years ago
1
Prefer system TMPDIR over project directory?
#79
rpetit3
opened
2 years ago
3
Running via docker on Mac M1
#78
snafees
closed
1 year ago
1
Release 1.4
#77
mciprianoCDC
closed
2 years ago
0
Minimum read length parameter
#76
gaworj
closed
2 years ago
3
Update containers as required for tower execution
#75
sateeshperi
closed
2 years ago
1
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