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Hi, thank you so much for the wonderful tool.
I have been working on bigwig visualization and depending on the display range, somehow the bigwig signals seem to change a lot. (v0.3.8) When we show …
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Hi,
I have multiple bigwig files that are biological replicates. I'd like to plot the mean and error across these replicates (e.g. between bigwigs rather than within each bigwig). Is there a way to…
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I'm trying to get haystack up and running but get an out of range error generating the bigwig files. This is the output after running `haystack_run_test`.
I get a similar error when running on real…
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My end goal is to annotate a VCF file with mappability scores, but in spot checking annotations for some mutation sites with the UCSC Genome Browser, I noticed some inconsistencies. Specifically, I an…
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## Describe the problem
I have macro to change my talents bound to Alt+F1, and when used I have this error message
### What steps will reproduce the problem?
1. Put action keybind on Alt+F1
2…
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### Description of the bug
Hi,
I want to ask why I use latesest version, but my results is still macs2, not macs3.
Here is my command line:
```
nextflow run nf-core/atacseq -resume -c nextflow.conf…
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I am running basenji_data.py on Micro-C data using bigWig format for basenji_data.py, and I ran into issue here.
stride_train 1 converted to 131072.000000
stride_test 1 converted to 131072.000000
…
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This may be more universal than just pasting or using aggregate, but the features using multiple bigWigs should do a check to make sure the internal chromosome sizes are all consistent among multiple …
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We already support bigBed. Adding support for bigWig shouldn't be hard.
danvk updated
9 years ago
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**Snakemake version**
7.31.0
**Describe the bug**
Take 3 rules (none set threads or resources unless noted):
- Rule 1 outputs using `pipe()`
- Rule 2 consumes the pipe from rule 1, sets `re…