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GangCaoLab
/
CoolBox
Jupyter notebook based genomic data visualization toolkit.
https://gangcaolab.github.io/CoolBox/index.html
GNU General Public License v3.0
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Error in plotting .mcool file
#101
hamy12398
closed
5 days ago
5
how to plot different colors for bigwig files when y axis is less than 0
#100
jiangshan529
closed
1 month ago
4
您好，可以画整个基因组互作吗？
#99
Zheng19w
opened
2 months ago
0
fix bug in issue #97
#98
wbszhu
closed
3 months ago
0
TypeError in Arcs() due to Argument Mismatch with matplotlib.patches.Arc
#97
skelviper
closed
3 months ago
3
Plot saving in API mode
#96
DexinYang1998
opened
3 months ago
1
Some error when plot GTF
#95
szbssg
closed
3 months ago
4
Genomic position track
#94
aminakur
closed
3 months ago
1
Heatmap for tracks
#93
StarkTS98
closed
3 months ago
1
Fixes issue https://github.com/GangCaoLab/CoolBox/issues/90
#92
ggilestro
closed
7 months ago
0
Equal aspect for hic matrix
#91
Phlya
opened
7 months ago
3
Bug in GTF handling [patch offered]
#90
ggilestro
closed
3 months ago
1
Is there a way to go directly from a pd.Dataframe version of a Bed file?
#89
haleybianchi
opened
9 months ago
0
Strange behavior of bigwig visualization
#88
camelest
opened
9 months ago
1
plot entire genome
#87
aminakur
opened
1 year ago
0
cool
#86
Zheng19w
closed
1 year ago
1
plot DNA feature error
#85
yangfeizZZ
opened
1 year ago
0
Requesting Assistance with CoolBox Visualization - Achieving A/B compartments
#84
wbszhu
opened
1 year ago
2
use with custom matplotlib figures
#83
Phlya
closed
1 year ago
2
TAD Image generation error
#82
Zheng19w
closed
1 year ago
3
No insulation score is being plotted
#81
aminakur
closed
1 year ago
0
Cool.fetch_data problem
#80
aminakur
closed
1 year ago
2
joint view two different cool files
#79
EnrichettaMileti
opened
1 year ago
1
How do I save a figure to a file?
#78
ianakim
closed
1 year ago
0
Installation fail with pip python3.9
#77
xunchen85
opened
1 year ago
4
Increase fontsize of GTF
#76
gdolsten
opened
1 year ago
0
Change aspect ratio of jointview
#75
gdolsten
opened
1 year ago
0
Error when plotting SNP track with no SNPs in plot range
#74
alexjcornish
opened
1 year ago
0
Missing arcs when plotting BEDPE file format
#73
eafyounian
opened
2 years ago
1
Apply CoolBox to the transcript coordinate system
#72
ifantasy
opened
2 years ago
0
How to use parameters from Class in the CLI mode?
#71
shunliubio
closed
2 years ago
1
A few bugs in loops (arcs) and Hi-C Heatmap body.
#70
Linhua-Sun
opened
2 years ago
1
Is it possibile to add highlight regions on Hi-C heatmap body horizontally?
#69
Linhua-Sun
opened
2 years ago
3
Docker installation correction
#68
skr3178
opened
2 years ago
0
[feature request]collinear view
#67
jksr
opened
2 years ago
2
bug when plotting gtf?
#66
jksr
opened
2 years ago
1
Couldn't change bin width of histgram
#65
zhouzhendiao
closed
2 years ago
7
*** glibc detected *** pairix: malloc(): memory corruption: 0x00007f9102e07210 ***
#64
zhouzhendiao
opened
2 years ago
2
is there a way to annotate with text
#63
jksr
closed
2 years ago
1
Squish bed file visualization
#62
perinom
closed
2 years ago
2
Problem with displaying Ideograms
#61
nneretti
closed
2 years ago
2
error in doctool: `param` does not have a `name` attribute
#60
rekado
closed
2 years ago
3
Jointview doesn't work with HiCPeaksCoverage
#59
gdolsten
opened
2 years ago
0
Coolbox and GTF
#58
gdolsten
closed
2 years ago
3
Frame.plot closes figure
#57
scyrusm
closed
2 years ago
1
JointView fails for .hic files
#56
tuomovirtanen
closed
2 years ago
1
How is insulation score calculation performed?
#55
gdolsten
closed
2 years ago
3
Is it possible to have multiple looping arcs in one track?
#54
gdolsten
closed
2 years ago
2
bed9 detected as a bed6
#53
alexlenail
opened
2 years ago
2
Support more of pyGenomeTracks' parameters
#52
alexlenail
opened
2 years ago
0
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