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Hi! I'm trying to get the annotation files using hg38 Ensembl GTF file.
I'm running it this way:
`python3 create_annotator.py -g Homo_sapiens.GRCh38.97.gtf -a hg38_ensembl`
And I'm getting t…
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I get error messages running the PPD v 2.0.1 script:
when I run the script: python ~/run_data/putative_paralog/PPD_2.0.1/PPD.py -ifa examples_for_PPD/supercontigs -ina examples_for_PPD/namelist_C.txt…
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I deleted a couple, but most of these are inherited from BioData Club. What more should we add (or take off) for the ODSI audience?
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Hello, I was just looking at the search parameters for your PMC query, and I was wondering if there was a reason for the particular scope that was used. It seems somewhat narrow on a couple of dimensi…
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This is occurring frequently for bdcat_notebooks, which defines several parallel jobs.
see: https://biodata-integration-tests.net/databiosphere/bdcat_notebooks/-/pipelines/1429
```
Waiting for pod …
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Hello,
This seems like a great pipeline, but I can't get it to work. One of the initial functions (model_fit.py) fails.
It is run in HiRise_commands here:
>cat all_smoothed_corrected.merged_his…
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Right now I can't modify the file myself because it disappeared from the repo (see this issue: https://github.com/gbif/registry/issues/178) but once everything is back in order: update `registry-examp…
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Mode of inheritance was implemented in Biodata time ago, and it's being used already in OpenCGA. We shall create a way of filtering by ModeOfInheritance.
This won't be implemented as an stand alone…
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Hi
During my installation of opencga release-1.0.0-final, it failed at opencga-app stage complaining about "incompatible types: java.lang.String cannot be converted to int", in file: opencga/opencg…
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package resumenew;
public class ResumeNew {
public static void main(String[] args) {
biodata p = new biodata();
cgpa d = new cgpa();
workSkills w = new…