-
Hi dbcan dev,
I really appreciate your effort making this tool open source for the community.
Actually, we have 150*2 paired end shotgun sequenced data and we think assembling more than 500+ sa…
-
Hi,
first of all thank you for SACCHARIS, it really makes it easier to characterize CAZymes.
I have been using it quite a bit lately and for most families Saccharis runs fine. Now I have come acro…
reslp updated
4 years ago
-
Hello,
I would like to use dbCAN2 to annotate proteins sequences. I have an error about Hotpep in my log file:
> Traceback (most recent call last):
> File "/home1/datahome/jaube/.local/bin/para…
jaube updated
4 years ago
-
Hi Fernando and Javier:
I've updated SQM again it works great,except for the fact there is a new error when I call the sqm2tables.py.
The error says this:
File "/home/install/SqueezeMeta-1.0.0/…
-
The output information a dbCAN run gives you for Hotpep and HMMER is less that a solo run of both would give you. Why is this the case?
-
I use git clone to download run_dbcan. But I don't know how to set the database path in run_dbcan.py. I run it with error.
`db/ ERROR: The database directory does not exist`
Could you help me?
Th…
-
Hi Dallas,
Sorry to be on here again - it looks like the new CAZy release has buggered up the cazy extract script once again. I used the command `for f in GH17 GH19 GH125 GT9 GT28 GT41; do cazy_ext…
-
hello.
i have some problem...
when i download the dbcan, i can't hmmpress dbcan-fam-HMMs.txt
```
wget http://csbl.bmb.uga.edu/dbCAN/download.php/dbCAN-fam-HMMs.txt
wget http://csbl.bmb.uga.edu…
-
Hi Rodrigo,
I tried to extract a few families and I noticed that out of e.g. 3000 entries in CAZy, I only get 250 when I run cazy-parser.
Is that the expected behavior?
Thanks,
George
geo80 updated
5 years ago
-
Unable to create database on Python 2.7.13. Output (exlcucing BeautifulSoup warning) as follows:
```bash
>> Gathering species codes for species with full genomes
>> Glycoside-Hydrolases
>> 145 …