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Description:
Create a Python script to get gene and transcript information from the Ensembl REST API for a given species and gene symbol. The script will take details like chromosome, start and end p…
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In STEP2 I ran the sample commands from STEP2 one by one for each chromosome, however, after a week of running it has not run and no errors have been reported and it is still running, is this normal s…
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### Description
After migrating a genetic algorithm project to .NET 9, I noticed that there was a performance regression, and I was able to track it down to a single method that performs invers…
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Hi,
I am trying to detect inter-chromosomal translocation events from targeted DNA-Seq data (PCR-based assay). Essentially I'd like to extract read pairs with R1 and R2 mapped to different chromoso…
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## Describe the issue
I'm annotating a vcf coming from Manta. In the output, some of the variants are not annotated and I don't know why. In my vcf, all the variants have all fields information (incl…
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First of all, I'd like to thank you for the amazing work done!
Secondly, I'm working on a fungal species with very high levels of chromosomal polymorphism and large translocations (of Mbp), and I alr…
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Hello,
I'm trying to run a script using HTSeq- count. I tried to use **--add-chromosome-info** as I need to have the chromosomal coordinate in my output file. Here is the script that I used:
**m…
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### Description of feature
Are sex chromosomes localised homologous pairs?
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I could not get the chromsizes.tsv data from human. It there anyone could help? thanks in advance.
scenicplus prepare_data download_genome_annotations --species "hsapiens" --genome_annotation_out_fna…
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