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Hi there,
I've been running a structured coalescent using the MultiTypeTree template, tip locations and dates etc.. All ESS values > 200, but when I make my final tree, the x axis looks strange (f…
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The current semantics of options is Tact is quite lengthy. It would be nice if it could be improved.
Reference: https://doc.rust-lang.org/std/option/enum.Option.html
To begin with, having `unwra…
0kenx updated
2 months ago
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Webpack 4 is an old version of Webpack that does no longer receive support for new language feature, e.g. neither optional chaining, nor the nullish coalescent operator, nor private class fields are s…
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In Splines branch, spline_builder_batched.hpp file, the object spline_tr is a buffer with the same size as spline (corresponding to the input/output). It implies that half memory has to be filled with…
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Hi Gary,
When I added exponential growth to my model, I'm getting a massive increases in runtime.
Naively, I would not expect that to happen. larger growth means, back in time, smaller Ne, which …
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Not an 'issue', just a log of some comments I'm making while reading this page.
> In continuous-time models, when {math}`M_{j,k}` is close to zero, this rate is
approximately equivalent to the fra…
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This will be mostly useful for myself.
Definition:
A binary node is identifiable when there is sufficient information to define its two children (when we say such a node is 2-identifiable, can this …
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# Purpose of the package
The purpose of the package is pretty obvious for anyone that follows Asgers course. So anyone that has worked with coalescent theory, will probably see the purpose of the pac…
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[Figure 1](https://github.com/lizzieinvancouver/asevdiversitydup/blob/main/figures/scan7May2023vitis.png)
I am not 100% sure we will keep this figure so work on it quickly! Minimal time ....
It …
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@nspope has found problems with the conditional coalescent mixture priors used by tsdate. Surprisingly, better results are gained by averaging the priors over all the nodes, and using this single dist…