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I have run the following python program program3.py by codon.
class g32Ck29 ():
l618xA2v = "IXgotDE13"
JR2F7RH5o = "r"
ZPs35284 = 0.5
vggx3vQ3 = 0.31
def Q0400A8 ( self , M1595y67A : int…
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We should add default codon tables of the following organisms:
1. Escherichia coli MG1655
2. Bacillus subtilis 168
3. Vibrio natriegens (whatever type strain)
4. Saccharomyces cerevisiae BY4741/…
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Hi @melkebir,
I was debugging unexpected crashes of your program. While doing that, I encountered that your Zuker.cpp algorithm is running out of bounds, which causes unexpected behavior. In parti…
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Please add an Documentation for all the codons and what they do.
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Hi,
I was wondering how to add an alternative start codon list in the RiboCode step. Thank you for your help!
Best,
Qidi
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I have run the following python program program1.py by codon.
class Q625NBX ():
TL331N2 = 0.77
syS0808 = 0.86
TaiXA3f9 = 28
HwexU9apV = 7886
def oDt49nu52 ( self ) -> bool :
self.TL…
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## Short description of the problem
When running `anvi-get-codon-frequencies`, there is a TypeError in how pandas is used in `_make_gene_codon_frequency_table`.
## anvi'o version
```
Anvi'o …
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### Compiler name
Codon
### Compiler version
0.16.3
### Compiler language
Python
### Compiler homepage
https://github.com/exaloop/codon
### Motivation
I'd like to be able to see the differenc…
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Is it possible to set spaln parameters when running ProtHin? I want to specify the translation table I want spaln to use.
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- [x] write about visualization.
- [x] Read background
Todos:
- [x] Title including transcript id, protein id & name
- [x] transcript tract: get exon lengths from `tx_coordinates.get_cds_regions…