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Dear all,
I really like using ContactMap Explorer! I was wandering if there is a way to create a pandas dataframe out of a ContactFrequency calculation.
Like:
```
traj=mdt.load('trajectory.h5'…
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Hi @jonaslb, I guess this project is stale now (?).
I thought that using something like this might be useful for one of my projects and I had some doubts. The major one is: Just as you get the fer…
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Hi,
First of all, thank you for the great tool. I am wondering there is a way to convert the output files to vcf format because I want to compare other SV callers' with eagleC's. What would be the …
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- [ ] Which linear layer (attention matrices and/or FFN/MLP layers) we would be recommending to finetune?
1. - [x] We need to identify which weight matrices have the highest importance for the fi…
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This is part of the GSoC project Testing and Measuring Variable Interactions With Kernels
See Equivalence of distance-based and RKHS-based statistics in hypothesis testing.
Implement distance correl…
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A potential problem here. When x_coords and y_coords are not the same, y_axis inherits axis labels and values from x_axis. Refer, line 222 - 235 in Brick_vizart_plot_heatmap.
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Hi, when I run pairLiftOver I keep on getting the error: TypeError: expected str, bytes or os.PathLike object, not NoneType
The code I am running is as follows:
`pairLiftOver --input --input-form…
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Hi CHESS,
First of all, thanks so much for letting the users updated about this beautiful software! Like many, I was also recently trying to use CHESS to analyze Hi-C data that our lab has generate…
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Followin from a meeting with @adamkucharski @sbfnk and @MJomaba and @LloydChapman, this issue is to request an implementation of the default model using {odin} as a backend. Having the implementation …
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Hi Tariq,
unfortunately this is the only way I found to contact you as there is no eMail or twitter account or anything else about your person online available.
I've read you book so far (german…