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Hi,
I am hoping to agglomerate my phyloseq object by phylum. I have done this with other phyloseq objects and had no issues but when I try agglomerate based on "Phylum" taxonomic rank it returns t…
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what is the difference here?
![image](https://github.com/gbif/portal-feedback/assets/4609956/0aeb5ae0-8f88-452e-856a-4b862afc28d4)
https://www.gbif.org/species/3218379
https://www.gbif.org/…
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### **Error in isosim_test()**
#Downloaded the zip file from GitHub page (https://github.com/MetaSys-LISBP/IsoSim)
#Unzipped the file and changed working directory for easier access to the R scrip…
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I am reading this paper: Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses, but I did not able to understand a few things:
1) Do we need to do these filtering…
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For very large data sets, each parallel_3 process is quite frankly, slow.
Adding [placeholders](https://github.com/statisticalbiotechnology/quandenser/blob/quandenser-pipeline/src/FeatureAlignment.…
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@cmungall, @wdduncan, @pbuttigieg, @kaiiam, @TBKReddy
I used the following terms from PO & BTO ontologies to annotate EnvO/MIxS 'env_medium' field for a set of ~1250 plant associated biosamples. Thes…
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老师好,我想知道在这一步该怎么调整label的数量,调整成显示丰度前10的门,其余可以合并为other之类的显示格式
# display the high light of phylum clade.
p2
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Since the request structure is failing...
Term: rhodamineFluorescence
Name: Rhodamine Fluorescence
Definition: The concentration of Rhodamine dye, usually measure using florescence. The rhod…
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I just found out about your tool via convo on the `DAS_Tool` GitHub. Looking forward to using it on my dataset which is an ocean metagenome that has several cyanobacteria, diatoms, and dinoflagellate…
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Hello,
I have an issue with the `compare_groups` function.
I want to create a heat tree matrix for which I use `compare_groups` on relative abundance counts created with `calc_obs_props`. But it wil…
LChWu updated
2 years ago