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Hi, prihoda：
I met some problems when using DeepBGC need for your help. If I want to use leave-class-out validation to demonstrate the good performance of the model. I use the following command:
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Hi @kblin and team. We are happy about your involvement in the DeepBGC module, would you be interested in integrating the module in antiSMASH?
DeepBGC can be used programmatically, here's an exampl…
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I'm getting a failure to install deepbgc using Anaconda. And Finished.
But Fails with "ImportError: cannot import name 'ChainMap' "
Is it the python version error?
my python version is 3.6
As fol…
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Can you please add gbff in EXTENSIONS_GENBANK? The format is compatible as just renaming the file to gbk allows the run to complete successfully.
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Hi, I have some problems about using DeepBGC to identify the BGCs in [Mycobacterium tuberculosis H37Rv (high GC Gram+)](https://www.ncbi.nlm.nih.gov/genome/?term=Mycobacterium+tuberculosis).
Here …
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Hi，now, we can upload the json file that generated by deepBGC to the website of antiSMASH with version 6.0.0.alpha1. But when I install the local program of antiSMASH 6.0.0.alpha1 on my computer, and …
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Hello, I am sorry to ask you for help again. 😥 I have some problem when I install deepbgc on WSL2.
First try: I follow your instruction to install deepbgc by `conda install deepbgc`. But it is not…
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I see that antiSMASH 6.0 has added a specification of a JSON based file format that allows users to load gene cluster predictions from DeepBGC to be displayed alongside antiSMASH's own results. When I…
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Hi,
recently I encounter the problem of different number of elements in the`*.bgc.tsv` output files. I am not sure if it is input specific or just result of the update to 1.25. For some rows, ther…
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EDIT:
I fixed the issue by downgrading scikit-learn to version 0.21 (`conda install scikit-learn=0.21`). sklearn.ensemble.forest is deprecated in version >= 0.22, where it uses sklearn.ensemble._fo…
ghost updated
3 years ago