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Hi PAGA community,
In the PAGA genome bio paper fig3 c,d, it shows how users could integrate RNA velocity information with PAGA to generated a directed PAGA graph. I really think that this is an am…
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One of these seem to be wrong
because
RNA polymerase III complex
and
DNA-binding transcription factor
should not co-occur
PF3D7_0206600 | transcription factor, putative | | RNA po…
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**UniProt UniRule (ID and label):**
GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEA with UR00063877
**Sequences with problematic annotation (ID…
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Hello Team,
I have a basic query regarding the fastq reads , i don't have fastq reads in pairs, i have single fastq reads generated from direct rna sequencing(SQK-RNA002), is it possible to run DIC…
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**What is the SO term name and accession?**
gRNA_gene (SO:0001264)
**Describe what you would like to change.**
Current def is "A noncoding RNA that guides the insertion or deletion of uridine res…
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Hi,
I want to plot kmer values of direct RNA sequenced samples, and got it to work successfully, but it appears that C and U center bases have the lowest signal, while A and G center nucleotides h…
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https://doi.org/10.1101/163220
> Motivation: The powerful learning ability of a convolutional neural network (CNN) to perform functional classification of DNA/RNA sequences could provide valuable c…
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GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000413 protein peptidyl-prolyl isomerization
GO:0001932 regulation of protein phosphorylation
GO:0001933 negat…
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Opening a ticket for discussion regarding the terms:
**transcription assay evidence - ECO:0000168:**
A type of direct assay evidence resulting from the detection and quantification of transcribed …
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Hello!
I have cDNA and direct RNA Nanopore reads which contain poly-A/poly-T sequences and adapters/barcodes.
A friend suggested me to use pychopper to remove those poly-A/poly-T sequences and a…