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nanoporetech
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pychopper
A tool to identify, orient, trim and rescue full length cDNA reads
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Pcs111
#66
nrhorner
closed
2 years ago
2
Update README.md
#65
GroundB
opened
2 years ago
0
Does Pychopper work with the PCS111 PCR cDNA kit?
#64
bernardo-heberle
closed
2 years ago
3
Customized primers
#63
HAHasani
opened
2 years ago
0
Can we use pychopper to trim all the reads including non-full-length reads?
#62
lauraht
opened
2 years ago
2
PCR-cDNA PCB 109 Kit : Too many unclassified reads
#61
eKariuki-sleepy
opened
3 years ago
2
Example Primer Configuration & Primer File.
#60
jkbenotmane
closed
3 years ago
0
Issue with line 3 of some fastq files
#59
ljyanesm
opened
3 years ago
0
some question about pychopper
#58
hugs314
opened
3 years ago
0
Using pychopper with DCS108 data
#57
alexey-larionov
opened
3 years ago
1
What config.txt should I use for a direct cDNA kit ?
#56
alexey-larionov
opened
3 years ago
1
I get following error
#55
guandailu
opened
3 years ago
3
Add support for reading gzipped input FASTQs and writing to stdout
#54
philres
closed
3 years ago
0
Any chance of getting pychopper to accept gzipped fastq as input?
#53
oneillkza
closed
3 years ago
10
Can I use custom, degenerate primers?
#52
mlosilla
opened
3 years ago
0
Protocol-specific read rescue for DCS109 (-x parameter) didn't seem to work
#51
pcantalupo
closed
3 years ago
1
can pychopper be used with SQK-DCS109 kit?
#50
pcantalupo
closed
3 years ago
2
Keep reads with exactly 2 primers
#49
igoronzy
closed
3 years ago
0
question for input of the pychopper
#48
hmyh1202
closed
3 years ago
2
Rescued reads
#47
ines-batista
closed
3 years ago
1
unused reads make 87% of total passed reads
#46
splaisan
closed
3 years ago
1
Generating report failed?
#45
claumer
closed
3 years ago
3
Add primers/models for PCS110 developer release
#44
philres
closed
3 years ago
0
How do I make a custom_primer.fa file?
#43
HappyCondaUser
closed
3 years ago
1
Only reverse reads are classified
#41
illarionovaanastasia
closed
3 years ago
2
pychopper length distribution in report doesn't match fastqc or nanostats
#40
kneubehl
closed
4 years ago
2
Artefactual primer configurations?
#39
smshuai
closed
4 years ago
1
Analyzing pcr cDNA barcoded sequencing data using pychopper
#38
Kyung-TaeLee
closed
4 years ago
1
SyntaxError when running make test
#37
JoshLoecker
closed
4 years ago
3
Unable to make test
#36
JoshLoecker
closed
4 years ago
1
customised primer configuration
#35
ozgegizlenci
closed
4 years ago
1
WARNING: No reverse complement for U found, returning argument
#34
yazuo0204
closed
4 years ago
1
Parasail error
#33
cnk113
closed
4 years ago
4
Error: ValueError: invalid literal for int() with base 10: 'such'
#32
guosongjia
closed
4 years ago
6
question about the primer sequence
#31
huangziyan11111
closed
4 years ago
1
How to choose reads type to the downstream process?
#30
huangziyan11111
closed
4 years ago
3
Error accoring when installing pychopper
#29
ecross1
closed
4 years ago
1
some improvement about load the input data
#28
huangziyan11111
closed
4 years ago
1
ZeroDivisionError, 0 sampled reads
#27
mptrsen
closed
4 years ago
1
Read truncation and mis-orientation
#26
GenomeRIK
closed
4 years ago
12
Score file of pychopper v2
#25
bressin
closed
4 years ago
1
HMMER not compatible with pychopper v2
#24
bressin
closed
4 years ago
1
questions about output full-length reads
#23
defendant602
closed
4 years ago
1
less full length reads detected than with the v0.5.0 version
#22
HegedusB
closed
4 years ago
9
Issue with unclassified reads
#21
Jordthomas93
closed
4 years ago
4
Error Sequence file - is empty or misformatted when using pHMM backend
#20
defendant602
closed
4 years ago
10
getting strand information for 'unclassified' reads
#19
michieitel
closed
5 years ago
2
Dev
#18
ksahlin
closed
5 years ago
0
Dev
#17
ksahlin
closed
5 years ago
0
error in pychopper run
#16
ljw90607
closed
5 years ago
5
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