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Dorado basecaller for ONT can call 5mC/5hmC not only at CpG, but also at CH sequence, now.
And many researchers, I think, like to visualize the modification at CG and CH separately, as IGV have those…
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Hello,
Thank you for developing these great long-read small variants callers! We have some Cas9 edited, PCR-based Nanopore samples (Dorado duplex basecalling dna_r10.4.1_e8.2_5khz_stereo@v1.2 and d…
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this issue is for bringing attention to specific search features or strategies that we want to incorporate into our search interface (for both the variant-centric and VTB views), to drive our data mod…
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The README outlines installation and a tutorial for use.
Section 5 says:
`Visualiazation of DNABERT consists of 2 steps. Calcualate attention scores and Plot.`
However section 5.2 seems to be…
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The example line hart is somewhat contrived, and represents a way to misuse line charts. Typically, line
charts connect a series of observations that are continuous in nature, such as timeseries dat…
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Hi,
It's the first time I am trying to use Control-FREEC and I have an issue with my first test data.
I don't really understand the error message and how to solve it.
I imagine there is no reads …
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This lesson is meant to be a bit modular, so that it can be adapted to a few different workflows depending on user preference. That said, we do need a default one. Here are my thoughts:
**OTUs vs. …
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I have been attempting to run the DEPtH program on a few myco genomes to understand the software and I am encountering an issue with the html output. Regardless of the genome I get the following erro…
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mitoz3.4 annotations draw circle diagrams all have a gap, but in other annotation platforms are circular
## Problem description
# Log messages from MitoZ (stdout and stderr)
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It would be nice to have a way to run VizBin in "non-interactive" mode. That means that the user should be able to set the values of the individual fields (e.g., `textfield_file`) at the command line …