issues
search
cancervariants
/
metakb
Central repository for the VICC metakb web application
MIT License
14
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
feat!: refactor graph DB code, streamline unneeded query transaction usage
#377
jsstevenson
opened
1 day ago
0
feat!: initialize query handler with graph, not graph credentials
#376
jsstevenson
closed
1 day ago
1
`QueryHandler` should take graph DB instance as arg
#375
jsstevenson
closed
1 day ago
1
feat!: replace instance var lists with pydantic model
#374
korikuzma
opened
5 days ago
0
Refactor graph/DB methods
#373
jsstevenson
opened
6 days ago
0
Batch-upload objects using `UNWIND`
#372
jsstevenson
opened
6 days ago
0
refactor!: rename `Transform` instance variables
#371
korikuzma
closed
2 days ago
1
refactor!: remove `extract_harvester` from `transform` method
#370
korikuzma
closed
2 days ago
1
log file has wrong name
#369
korikuzma
opened
1 week ago
1
fix(tests): update test_batch_search to apply PR (#361) suggestions
#368
korikuzma
closed
1 week ago
0
build: temporarily pin ga4gh.vrs==2.0.0a6
#367
korikuzma
closed
1 week ago
0
refactor: use updated annotation API
#366
jsstevenson
closed
2 weeks ago
0
fix: querying studies based on therapeutic
#365
korikuzma
closed
1 week ago
2
`METAKB_NORM_EB_PROD` -> `METAKB_EB_PROD`
#363
jsstevenson
opened
2 weeks ago
1
Normalizers fail silently
#362
jsstevenson
opened
2 weeks ago
3
feat: add batch search by variations
#361
jsstevenson
closed
2 weeks ago
0
Work out intersection vs union issues in `_get_related_studies` query
#360
jsstevenson
closed
1 week ago
5
fix: don't use deprecated multi property semantics
#359
jsstevenson
closed
2 weeks ago
0
test: remove marks from fixtures (they don't do anything)
#358
jsstevenson
closed
2 weeks ago
0
Database layer refactor
#357
jsstevenson
opened
2 weeks ago
0
fix: don't use deprecated graph driver destructor
#356
jsstevenson
closed
2 weeks ago
0
Colon separator for relationship types is deprecated
#355
jsstevenson
closed
2 weeks ago
2
fix: use latest minor civicpy release to get correct schema
#354
jsstevenson
closed
3 weeks ago
0
CIViC harvest fails
#353
jsstevenson
closed
3 weeks ago
1
fix: use correct Disease model
#352
jsstevenson
closed
3 weeks ago
0
build: fix pipenv build
#351
jsstevenson
closed
3 weeks ago
0
pipenv build currently failing
#350
jsstevenson
closed
3 weeks ago
3
test: optionally minimize connection debug logging
#349
jsstevenson
closed
3 weeks ago
0
Don't apply marks to fixtures in tests
#348
jsstevenson
closed
2 weeks ago
1
Resolve pydantic serializer warnings
#347
jsstevenson
closed
3 weeks ago
1
feat: perform better logging
#346
jsstevenson
closed
4 weeks ago
0
Rewrite test_datebase.py tests as a validation job
#345
jsstevenson
opened
1 month ago
2
feat!: break out CLI for more specific commands/more reasonable defaults
#344
jsstevenson
closed
1 month ago
4
docs: initial docs work
#343
jsstevenson
closed
1 week ago
0
feat!: sharpen type annotation
#342
jsstevenson
closed
1 month ago
0
Remove `extract_harvester` call from `transform`
#341
korikuzma
closed
2 days ago
1
Revert "feat!: sharpen up type usage (#332)"
#340
jsstevenson
closed
1 month ago
0
feat: prevent usage of aws db instances in cli
#339
korikuzma
closed
1 month ago
0
refactor!: clean up harvest method
#338
korikuzma
closed
1 month ago
1
`metakb.harvesters.base.Harvester.create_json` shouldn't be reimplemented by child classes
#337
jsstevenson
closed
1 month ago
2
feat!: create_json accepts filepath arg and only creates composite file
#336
korikuzma
closed
1 month ago
0
create_json should accept a path to file
#335
korikuzma
closed
1 month ago
1
cicd: add issue templates, stalebot, and branch action
#334
korikuzma
closed
1 month ago
0
build: raise support to require python >=3.10
#333
jsstevenson
closed
1 month ago
1
feat!: sharpen up type usage
#332
jsstevenson
closed
1 month ago
0
Make sure CLI can't overwrite cloud normalizer DBs
#331
jsstevenson
closed
1 month ago
2
refactor: use `SourceName` enum
#330
korikuzma
closed
3 months ago
0
incorporate staging changes into main
#329
korikuzma
closed
3 months ago
4
fix: replace `StrEnum` with `Enum`
#328
korikuzma
closed
3 months ago
0
incorporate staging changes into main
#327
korikuzma
closed
3 months ago
2
Next