cancervariants metakb issues

cancervariants / metakb

Central repository for the VICC metakb web application

MIT License

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issues

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feat!: rename study --> study statement / statement

#405 korikuzma closed 6 days ago
0
feat!: use cat-vrs-python + va-spec-python

#404 korikuzma closed 6 days ago
1
build!: require python >= 3.11

#403 jsstevenson opened 1 week ago
0
chore: add acceptance criteria to issue templates

#402 jsstevenson opened 1 week ago
0
cicd: update precommit configs

#401 jsstevenson opened 1 week ago
0
style: update ruff configs

#400 jsstevenson opened 1 week ago
1
chore: update gitignore

#399 jsstevenson opened 1 week ago
0
cicd: warn when merging to main

#398 jsstevenson opened 1 week ago
0
fix: correct syntax error in `gene_id_constraint`

#397 korikuzma closed 1 week ago
1
chore!: rename transform class and dirs to transformers

#396 korikuzma closed 3 weeks ago
2
Revise "Study" node type to "Statement"

#395 ahwagner closed 6 days ago
7
Provide data versioning/metadata

#394 jsstevenson opened 1 month ago
0
Rename `Transform` class to `Transformer` for naming consistency

#393 korikuzma closed 3 weeks ago
1
build(deps): bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

#392 dependabot[bot] closed 2 months ago
4
Reconstruct repo as monorepo (client + server)

#391 jsstevenson opened 3 months ago
0
Add MOA fetcher from wags-tails 0.1.4

#390 jsstevenson opened 3 months ago
0
build!: update ga4gh.vrs + gene/variation normalizers

#389 korikuzma closed 4 months ago
0
use cat-vrs-python and va-spec-python

#388 korikuzma closed 6 days ago
2
feat!: rename env var for logging + cred handling

#387 korikuzma closed 4 months ago
1
build!: update normalizer + ga4gh.vrs depdencies

#386 korikuzma closed 4 months ago
2
chore: update seqrepo version to 2024-02-20

#385 korikuzma closed 4 months ago
0
feat: enable pagination

#384 jsstevenson closed 4 months ago
1
cicd: update actions versions, stalebot, + templates from template repo

#383 korikuzma closed 4 months ago
0
feat: update pre-commit version + add more hooks

#382 korikuzma closed 4 months ago
0
feat!: use setuptools-scm, capture version at package root

#381 korikuzma closed 4 months ago
0
style: update ruff version + add more rules

#380 korikuzma closed 4 months ago
0
Update normalizer/ga4gh dependencies

#379 korikuzma closed 4 months ago
1
fix: catch TokenRetrievalError in ViccNormalizers + update log levels

#378 korikuzma closed 4 months ago
0
feat!: refactor graph DB code, streamline unneeded query transaction usage

#377 jsstevenson closed 4 months ago
0
feat!: initialize query handler with graph, not graph credentials

#376 jsstevenson closed 4 months ago
1
`QueryHandler` should take graph DB instance as arg

#375 jsstevenson closed 4 months ago
1
feat!: replace instance var lists with pydantic model

#374 korikuzma closed 4 months ago
1
Refactor graph/DB methods

#373 jsstevenson closed 4 months ago
1
Batch-upload objects using `UNWIND`

#372 jsstevenson opened 5 months ago
0
refactor!: rename `Transform` instance variables

#371 korikuzma closed 4 months ago
1
refactor!: remove `extract_harvester` from `transform` method

#370 korikuzma closed 4 months ago
1
log file has wrong name

#369 korikuzma closed 4 months ago
3
fix(tests): update test_batch_search to apply PR (#361) suggestions

#368 korikuzma closed 5 months ago
0
build: temporarily pin ga4gh.vrs==2.0.0a6

#367 korikuzma closed 5 months ago
0
refactor: use updated annotation API

#366 jsstevenson closed 5 months ago
0
fix: querying studies based on therapeutic

#365 korikuzma closed 5 months ago
2
`METAKB_NORM_EB_PROD` -> `METAKB_EB_PROD`

#363 jsstevenson closed 4 months ago
2
Normalizers fail silently

#362 jsstevenson closed 4 months ago
4
feat: add batch search by variations

#361 jsstevenson closed 5 months ago
0
Work out intersection vs union issues in `_get_related_studies` query

#360 jsstevenson closed 5 months ago
5
fix: don't use deprecated multi property semantics

#359 jsstevenson closed 5 months ago
0
test: remove marks from fixtures (they don't do anything)

#358 jsstevenson closed 5 months ago
0
Database layer refactor

#357 jsstevenson opened 5 months ago
0
fix: don't use deprecated graph driver destructor

#356 jsstevenson closed 5 months ago
0
Colon separator for relationship types is deprecated

#355 jsstevenson closed 5 months ago
2