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https://mp.weixin.qq.com/s/fKwfqwcN5gR1XmYkgDmiuw
ixxmu updated
2 years ago
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I tried to use this tool for my cancer pair-end sequencing data from circle DNA enrichment samples. In comparison, circle-map works well. However, as ECCsplorer outputs more robust results and files b…
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Hi, Excuse me, what are the formats of the three files output by eccDNA_RCA_nanopore?
Are there any output instructions?
thanks!
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### Description of bug
Using multiQC in my nextflow pipeline (https://github.com/DSchreyer/circdna) caused all modules to break when using -profile conda. I repeated the run with -profile docker and …
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https://mp.weixin.qq.com/s/3b1_kGNTNBlHwPg9Y7py1g
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/F6be3WHpJROToPV-SDpGQg
ixxmu updated
2 years ago
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[error-2021-10-17_01-51-59.txt](https://github.com/njaupan/ecc_finder/files/7386432/error-2021-10-17_01-51-59.txt)
[ecc.sr.csv](https://github.com/njaupan/ecc_finder/files/7386434/ecc.sr.csv)
Hi…
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Hi,
I again tested it on the arabidopsis which genome size is 120Mb, which in this mutant ONSEN are known to form eccDNA ( split read alignment for this element attached in the picture).
However, wi…
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Hi, I'm new to this field and trying to identify/verify the true eccDNA from my WGS data. Could you explain the "circle score" a little more? How it was calculated ? (equation?)
In the reference pa…
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Hi, I tried several eccDNA detector.
Here, is ECCsplorer suitable for only one WGS data set (not amplified by phi29 polymerase)?
If yes, any suggestion for this situation?