-
As developer I want an API endpoint such that when I send a GET request to the URL, hateoas compliant, paginated list of all studies in the database is returned in JSON Format.
This will be a replace…
-
The only place I know that uses EFO directly is the Ontology service to get category terms, but we have a lightweight fallback for that.
Ontologies that need it already import it. Thus removing it …
-
Hi @krchristie @zoependlington @paolaroncaglia
I think, given the timing it would be best if we could both approach the 'response to' terms in a systematic way rather than as part of sporadic tick…
-
Hi,
Thanks for the helpful package.
I realized that e.g., for `EFO`, there is a problem when trying to access a term like:
```
> Term('efo', 'EFO:0001200')
Error during wrapup: HTTP 404 Not…
-
- [ ] Find the appropriate DOS-DP pattern to create new OBA terms (provided they do not already exist) that correspond to the EFO terms in the table below.
- [ ] Fill in the appropriate tsv data.
…
-
Hi! I noticed that the `OlsSearch` does not always return the exact matching term (e.g., HP:0003003 vs. NCIT:C4872). I'm not sure why they behave differently. Could you help me to understand/resolve t…
-
# Context
@jahilton reported the case in [**#cell-science-platform**](https://czi-sci.slack.com/archives/C06AVGFV222/p1712859564920389).
This issue depends on [Add modality](https://github.com/…
-
It appears that /annotations/search endpoint returns incorrect value-value.URI pairings on occasion. Some examples are
- [http://www.ebi.ac.uk/efo/EFO_0004425](https://gemma.msl.ubc.ca/rest/v2/anno…
oganm updated
2 months ago
-
- will map terms from [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-attribute-ontology/blob/master/src/mappings/oba-efo-unreviewed.dosdp.tsv)
- filtered by **attribute_labels**: …
-
Hi,
from an analysis of FAERS data, we have obtained a list of 1,770 MedDRA to MONDO mappings that we believe have a very high level of confidence:
[meddra-mondo-xref-0995-1.json.zip](https://gith…