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Hi there,
I would like to apply OFF-PEAK to some targeted EM-seq data (obtained using the Twist Methylome Panel). However, since the tool was designed specifically for exome sequencing data, all ta…
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Good afternoon,
It is written that "Minimap2 often misses small exons."
I would like to know what is the size of these small exons, since I couldn't find this information online
Thank you
Beat…
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Hi,
I run BRAKER3 to annotate a new reference genome I had assembled. I used proteome from the closest species I found as a training set. BRAKER call was
**braker.pl --gff3 --threads=12 --species=Ve…
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Hi
Great work with trackplot
I currently plotted some reads which have polyA tail length as attached
is there a way to order these reads by either transcript ie same exon and intron and then by…
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Hi, thank you for developing such an excellent tool!
I encountered an error while running the `dataprep` function in the xpore software as follows:
```py
KeyError …
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Hi there,
Is there an example for and ? I failed to run sorf_to_genome.py, and kept giving IndexError at exon linesplit.
Thanks!
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Dear Daianna,
I have used your pipeline to analyze new data and obtained promising results. Thank you.
During the analysis, I encountered one challenge regarding the precise determination of the…
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I'm wondering if your annotation source provides exon numbering that can be connected to the ENST id for each fusion call. I had planned on just writing a little bit of code to identify these based o…
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In the exon plots, have option to print exon number.
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In the Limitations section you write.
- Minimap2 often misses small exons.
Can you define "small exons"? what's the range? there are exons of 3 bps just to be clear.