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Hi
I'm using vg tools v1.50.1 "Monopoli"
I've produced a graph from 7 different genomes of the same species using minigraph-cactus.
I've used the indexes produced from minigraph-cactus with `…
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Please provide as much information as you can:
* **Suggested term label:**
mycofactocin-coupled metabolic process
* **Definition (free text)**
The chemical reactions and pathways performed by…
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#### Summary:
Use [`alembic`](https://alembic.sqlalchemy.org/en/latest/batch.html) or similar to manage database migration.
#### Description:
In discussions with users, modifications to the S…
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Schematize should be running as a component inside of JBrowse2. This is a separate repository at https://github.com/graph-genome/jbrowse-components which should check out Schematize repo as a submodu…
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The current VCF spec allows for a * allele (no brackets):
"The ‘*’ allele is reserved to indicate that the allele is missing due to a upstream deletion."
Currently, Allele, VariantContext, and G…
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Please consider supporting the pairwise mapping format of minimap2:
https://github.com/lh3/miniasm/blob/master/PAF.md#paf-a-pairwise-mapping-format
Note that minimap2 also supports outputting SAM.…
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My name is namcheol kim.
I am going to do a LPS imputation test based on 1kgp3 panel.
My input :
sample1_R1.fastq.gz
sample2_R2.fastq.gz
Panel :
1kgp3 panel
I read this url.(https:/…
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Hello,
I'm calling variants using a cactus generated graph genome, generated and indexed as previously reported in another issue (#2362). Alignments and post processing is described in the issue #254…
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Hello,
I am trying to run this for a set of raw sequences for Anopheles gambiae. I used EDTA to create a TE library from the agamP4 genome assembly and then used my raw sequences as input for this …
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@DomNelson and I were just discussing the possibility of adding support for multiple chromosomes to tskit. One possibility which seems like it might be a reasonably smooth path forward is the followin…