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# Open, Reproducible, and Decentralized Workflows with COINSTAC
***By Eric Verner, Center for Translational Research in Neuroimaging and Data Science***
- Theme: Open Workflows
- Format: Software/pro…
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Brain cell finder is a tool for fully automated localization of soma in 3D mouse brain images acquired by confocal light sheet microscopy.
https://github.com/paolo-f/bcfind
Started here:
https:…
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**Description**
When I use this command to convert one subject,
$ clinica convert adni-to-bids /path/to/adni_data /path/to/clinical_data /path/to/output_bids --xml_path /path/to/adni_metadata -m T1 …
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Hi! I am new to fmriprep, I want to analyze my resting-state fMRI data based on surface. Considered the resolution of functional image, fsaverage5 seems a favorable destination surface for me.
So f…
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Hi fmriprep experts,
I am using fmriprep 1.4.0 to preprocess our anatomical and functional data. I found something wrong with the brain tissue segmentation and the spatial normalization of the T1w.…
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Hello,
I have completed the resting-state fMRI preprocessing based on fmriprep 20.1.1. When I checked the results in den-91k space (i.e., files named ...fsLR_den-91k_bold.dtseries.nii), I found there…
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@bock42 @gfrazzetta @JackRyan1989
It looks to me like this repo contains some MRI pre-processing code, and other scripts used to check for the validity of data directories on DropBox. Perhaps other …
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [X] Linux
- [ ] Mac
- [X] Windows
### Operating system version
For example one of the fol…
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**Is your feature request related to a problem? Please describe.**
Right now you have to populate many tables to run analyses; this may be cumbersome to users
**Describe the solution you'd like**
…
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***By SEA-SIG representatives: Nick Souter (University of Sussex), Niall Duncan (Taipei Medical University), Nikhil Bhagwat (McGill University), Polona Kalc (Jena University Hospital)***
***Recordi…