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Hello,
The dDocentHPC analyses completed almost to the end, but I get at the very end the following error message:
vcfcombine: symbol lookup error: /home/bt140047/mambaforge/envs/ddocent/bin/../lib…
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I have vcf files which are generated using freebay, how could I add the clinvar annotation to the vcf and convert to maf?
I try to run as following
vep --input_file JH020.soma.freebayes.vcf --o…
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**Describe the bug**
Hello. First off, thank you for taking the time to read this. As previously described in https://github.com/freebayes/freebayes/issues/619 and https://github.com/freebayes/fr…
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Hi,
Thanks for providing FreeBayes.
We are currently using FreeBayes v1.3.1-dirty via Galaxy on a server that handles 256 threads on 128 cores on 2 CPU with in total 2TB RAM.
In a current pro…
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v1.3.5 Build log
Step 9/16 : RUN cd "$SOFT" && wget -q "https://github.com/freebayes/freebayes/releases/download/v${FREEBAYES_VERSION}/freebayes-${FREEBAYES_VERSION}-src.tar.gz" -O "$SOFT/freebay…
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Hello,
I hope you're well. I am struggling to get any install of Snippy working.
I've followed all instructions using either Conda or Brew, and both result in errors. I've even re-installed cond…
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Hi,
I'd like to report a small bug that I occasionally see happening in my data-set;
- Extremely large deletions are often called as homozygous while clear heterozygosity can be seen in read-mappi…
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Hi,
I have a local Galaxy instance, and have made a workflow for multiple samples. The workflow works as intended, but I can't keep the names of the samples, because I lose them at the FreeBayes st…
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Hi,
I am using `snvphyl-galaxy-cli/1.3.0` and noticed a possible discrepancy in the ploidy argument for freebayes. I run the pipeline with:
```
snvphyl.py --galaxy-url http://snvphyl-galaxy.lo…
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Hello,
I am trying to incorporate the ensemble approach in my bcbio analysis and getting errors at the bcbio.variation command for validation of calls. Here are some details,
Run log -
/gpfs/ngs/on…
ssaif updated
10 years ago