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Dear Daniel and Luke,
I'm trying to look at how host breadth of tip taxa (numerical value, ranging from 1 to 15) relates to the number of genes in a gene family each tip taxa has, and I have these …
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Currently, gene_wise simply counts variants in families, doesn't do any phasing. If we made it handle phasing as needed for comp_hets, then we could use the gene_wise machinery to drive all of the exi…
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To support new use cases from @ValWood , PANTHER IDs should be supported in addition to the regular gene products in column 4, filtering down on PANTHER families.
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This is an epic issue about how to model metaclasses in ontologies
## Charlie's original question
I [asked a question](https://obo-communitygroup.slack.com/archives/C01BDKWDS91/p1695723651721169…
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Hello,
The README mentions that you will be adding a tutorial soon. Are you still planning on adding one? I'd like to try your strategy myself for a few gene families I am interested in.
Thanks
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The gene family detail component is using esoteric knowledge of the Legume Information System to create links to gene family trees (though the URL is provided via the config file, the GET structure of…
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We should create exports of the taxonomic assignments for all Rfam families. This is basically what is done the rfam-taxonomy repo but the exports should be part of our FTP. I'm thinking we should use…
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With GPML2017 we will define a set of new groupStyles and PV needs to be updated.
- default groupStyle: Group (no visual representation - as "Group" is implemented at the moment)
- Complex (no ch…
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Hi David,
I was recently using OrthoFinder to look for species-specific orthogroups in a new genome that we've assembled. However, I noticed that several of the orthogroups classified as species-sp…
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The micro-synteny viewer is great at visualizing the similarities and differences between gene family tracks. However, when there are many results tracks, it's hard to visually compare tracks that are…