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Rfam
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rfam-production
Rfam production pipeline
Apache License 2.0
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MicroRNA thresholding problem
#176
AntonPetrov
opened
2 months ago
0
Genome pipeline
#175
blakesweeney
closed
3 months ago
0
Microrna slurm
#174
blakesweeney
closed
9 months ago
0
Add/Update documentation and make minor fixes
#173
emmaco
closed
11 months ago
1
Fixes
#172
emmaco
closed
11 months ago
0
Update Rfblast
#171
emmaco
opened
11 months ago
0
Fixes for Release 14.10
#170
emmaco
closed
11 months ago
0
Update R-scape in codon
#169
emmaco
closed
1 year ago
0
automate copy of files to FTP .release
#168
emmaco
closed
1 year ago
0
Release 14.10 checklist
#167
emmaco
opened
1 year ago
0
Non utf-8 encoding in RF02541.stockholm.txt
#166
benjamin-lieser
opened
1 year ago
1
Update pdb_mapping.nf
#165
emmaco
closed
1 year ago
0
Apicuron
#164
blakesweeney
closed
11 months ago
0
miRNAs updates microrna_progress.py
#163
emmaco
closed
1 year ago
0
Update Readme.md
#162
emmaco
closed
1 year ago
0
Rfblast
#161
emmaco
closed
1 year ago
0
update format_rfam_clans
#160
emmaco
closed
1 year ago
0
fix 'hitCount' KeyError
#159
emmaco
closed
1 year ago
0
Remove [] from seed tree files
#158
blakesweeney
opened
1 year ago
0
Fix authors in 3D seed files
#157
blakesweeney
opened
1 year ago
0
Create a taxonomy export fie
#156
blakesweeney
opened
1 year ago
2
Bump certifi from 2016.2.28 to 2022.12.7
#155
dependabot[bot]
opened
1 year ago
0
Batch 5
#154
emmaco
closed
1 year ago
0
Add script to query NCBI and update rfamseq and taxonomy tables
#153
emmaco
opened
2 years ago
0
Bump django from 2.2.27 to 2.2.28
#152
dependabot[bot]
opened
2 years ago
0
Bump requests from 2.10.0 to 2.20.0
#151
dependabot[bot]
opened
2 years ago
0
add rfam-ena mapping to release pipeline
#150
emmaco
closed
2 years ago
0
automate sync/copy over of databases
#149
emmaco
opened
2 years ago
1
Release checklist 15.0
#148
emmaco
opened
2 years ago
0
Release improvements
#147
emmaco
closed
2 years ago
0
Use --top-only for cmscan on 3D structures
#146
blakesweeney
closed
9 months ago
2
change svn url
#145
emmaco
closed
2 years ago
0
Generate ftp
#144
emmaco
closed
2 years ago
0
Notify if family gains a new 3D structure mapped
#143
blakesweeney
opened
2 years ago
1
remove -cnompi
#142
emmaco
closed
2 years ago
0
pdb message formatting
#141
emmaco
closed
2 years ago
0
Run 3d seed alignment steps with weekly PDB pipeline
#140
emmaco
closed
2 years ago
0
Rebuild all families as part of 15.0 scanning
#139
blakesweeney
opened
2 years ago
0
Try to build full alignments
#138
blakesweeney
opened
2 years ago
0
Detect if a PDBe 'should' match some Rfam family
#137
blakesweeney
opened
2 years ago
0
tsv file for num families each release on ftp
#136
emmaco
closed
2 years ago
0
Progress mirnas
#135
emmaco
closed
2 years ago
0
auto copy of FTP files for release process
#134
emmaco
closed
2 years ago
0
Fix unit tests
#133
emmaco
closed
2 years ago
0
3d pdb pipeline
#132
emmaco
closed
2 years ago
0
microRNA on codon
#131
emmaco
closed
2 years ago
1
Remove GO term GO:0045742 from RF03419
#130
blakesweeney
closed
2 years ago
1
Pdb fix config
#129
emmaco
closed
2 years ago
0
Update pdb_mapping.nf
#128
emmaco
closed
2 years ago
0
move genome scripts to folder
#127
emmaco
closed
2 years ago
0
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