Rfam rfam-production issues

Rfam / rfam-production

Rfam production pipeline

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issues

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Microrna slurm

#174 blakesweeney closed 4 months ago
0
Add/Update documentation and make minor fixes

#173 emmaco closed 7 months ago
1
Fixes

#172 emmaco closed 7 months ago
0
Update Rfblast

#171 emmaco opened 7 months ago
0
Fixes for Release 14.10

#170 emmaco closed 7 months ago
0
Update R-scape in codon

#169 emmaco closed 8 months ago
0
automate copy of files to FTP .release

#168 emmaco closed 8 months ago
0
Release 14.10 checklist

#167 emmaco opened 8 months ago
0
Non utf-8 encoding in RF02541.stockholm.txt

#166 benjamin-lieser opened 8 months ago
1
Update pdb_mapping.nf

#165 emmaco closed 11 months ago
0
Apicuron

#164 blakesweeney closed 7 months ago
0
miRNAs updates microrna_progress.py

#163 emmaco closed 12 months ago
0
Update Readme.md

#162 emmaco closed 12 months ago
0
Rfblast

#161 emmaco closed 1 year ago
0
update format_rfam_clans

#160 emmaco closed 1 year ago
0
fix 'hitCount' KeyError

#159 emmaco closed 1 year ago
0
Remove [] from seed tree files

#158 blakesweeney opened 1 year ago
0
Fix authors in 3D seed files

#157 blakesweeney opened 1 year ago
0
Create a taxonomy export fie

#156 blakesweeney opened 1 year ago
2
Bump certifi from 2016.2.28 to 2022.12.7

#155 dependabot[bot] opened 1 year ago
0
Batch 5

#154 emmaco closed 1 year ago
0
Add script to query NCBI and update rfamseq and taxonomy tables

#153 emmaco opened 1 year ago
0
Bump django from 2.2.27 to 2.2.28

#152 dependabot[bot] opened 1 year ago
0
Bump requests from 2.10.0 to 2.20.0

#151 dependabot[bot] opened 1 year ago
0
add rfam-ena mapping to release pipeline

#150 emmaco closed 1 year ago
0
automate sync/copy over of databases

#149 emmaco opened 1 year ago
1
Release checklist 15.0

#148 emmaco opened 1 year ago
0
Release improvements

#147 emmaco closed 1 year ago
0
Use --top-only for cmscan on 3D structures

#146 blakesweeney closed 5 months ago
2
change svn url

#145 emmaco closed 1 year ago
0
Generate ftp

#144 emmaco closed 1 year ago
0
Notify if family gains a new 3D structure mapped

#143 blakesweeney opened 1 year ago
1
remove -cnompi

#142 emmaco closed 1 year ago
0
pdb message formatting

#141 emmaco closed 1 year ago
0
Run 3d seed alignment steps with weekly PDB pipeline

#140 emmaco closed 1 year ago
0
Rebuild all families as part of 15.0 scanning

#139 blakesweeney opened 1 year ago
0
Try to build full alignments

#138 blakesweeney opened 1 year ago
0
Detect if a PDBe 'should' match some Rfam family

#137 blakesweeney opened 1 year ago
0
tsv file for num families each release on ftp

#136 emmaco closed 1 year ago
0
Progress mirnas

#135 emmaco closed 1 year ago
0
auto copy of FTP files for release process

#134 emmaco closed 1 year ago
0
Fix unit tests

#133 emmaco closed 1 year ago
0
3d pdb pipeline

#132 emmaco closed 1 year ago
0
microRNA on codon

#131 emmaco closed 2 years ago
1
Remove GO term GO:0045742 from RF03419

#130 blakesweeney closed 1 year ago
1
Pdb fix config

#129 emmaco closed 2 years ago
0
Update pdb_mapping.nf

#128 emmaco closed 2 years ago
0
move genome scripts to folder

#127 emmaco closed 2 years ago
0
add release step to copy to ftp

#126 emmaco closed 2 years ago
0
add nfs location for PDB file storage

#125 emmaco closed 2 years ago
0