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After updating to 0.4.3, genome_fetcher.py reported error:
```
DAJIN2 --control barcode01 --sample barcode02 --allele actc1L_cont_knockin.fa --name 02 --genome xenLae2 --threads 8
2024-03-29 11:48…
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Hi, I have two huge genomes (ref: 48G; query: 20G).
To obtain an accurate genome alignment, I tried to annotate the transposable element (TE) and filter the non-TE sequence longer than 50bp to be the…
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e.g. like http://datanongrata.com/2019/04/27/67/
going from
![image](https://github.com/sourmash-bio/sourmash_plugin_betterplot/assets/51016/e58d52b8-6329-4267-a9be-f6216b0fc661)
to
![ima…
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Dear Shujun,
We're using LTR_retriever to assess a genome assembly for Chrysanthemum lavandulifolium. Because the genome is very large and a single chromosome's size exceeds 300 MB. I have been ru…
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I tried to to re-run WITCH after termination due to unexpected server down, but WITCH fails to retrieve file.
In fact, there is no directory named /data/genome/run/snyoo/programs/WITCH/results/Bacter…
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# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back up and deprecate old fasta files in BLAST
- [ ] back up and deprecate old fasta files in Hmmer
# Add new content to i5k …
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Hi!
i noticed that `SelectGenes` Available genome are: hg19, hg38, mm9, and mm10
can i use the genomes of other species?
If so, how exactly should I do it
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Hi
I'm very impressed with Bactopia. The installation was very straightforward.
I wish to use bactopia to compare my genomes. These genomes are already assembled using a bespoke pipeline and I just…
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Dear Author
First, I like to thank you for your great publication. I have a question about How to add a Virus Genome to the Human hg38 genome to use CAGEfightR. If you don't mind could you please h…
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We've recently seen quite a few samples with good genome coverage ~90% (or higher) fail to receive variant calls when using freyja demix (`freyja demix --barcodes $(BARCODES) --output output/${sample…