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akikuno
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DAJIN2
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
MIT License
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Release v0.5.6
#68
akikuno
opened
1 week ago
0
Move the FASTX IO processing to `utils.io`.
#66
akikuno
closed
1 month ago
0
Patch v0.5.5 (Version Bump to v0.5.5.1)
#65
akikuno
closed
1 month ago
0
Patch v0.5.5
#64
akikuno
closed
1 month ago
0
Reveme `preprocess.detect_inversion` in DAJIN2 v0.5.5
#63
akikuno
closed
1 month ago
1
Add tests to `DAJIN2.core.report`
#62
akikuno
opened
1 month ago
0
Output reads with many sequence errors in the control as `BAM/control/sequence_errors.bam`, and exclude them from the analysis.
#61
akikuno
closed
1 month ago
1
During clustering, `N` should be treated as a mismatch.
#60
akikuno
closed
1 month ago
3
Automatically retrieve version information
#59
akikuno
closed
1 month ago
1
Downsampling the sample reads to a maximum of 10,000 for clustering
#58
akikuno
closed
1 month ago
1
Imprementation of high-sensitive mode
#57
akikuno
opened
1 month ago
0
Develop v0.5.5
#56
akikuno
closed
1 month ago
0
Add `sr` presets to all execusions
#55
akikuno
closed
1 month ago
2
Replace `midsv` to `csvtag`
#54
akikuno
opened
4 months ago
1
Replace `typing.Generator` to `collections.abc.Iterator`
#53
akikuno
closed
1 month ago
1
Modify `convert_cssplit_to_dna`
#52
akikuno
opened
4 months ago
0
Remove `pandas` from pyproject.toml
#51
akikuno
closed
1 month ago
1
Add alignment chart
#50
akikuno
opened
4 months ago
0
Remove `networkx` from pyproject.toml
#49
akikuno
closed
1 month ago
1
Develop v0.5.4
#48
akikuno
closed
4 months ago
0
0.5.3
#47
akikuno
closed
4 months ago
0
Test DAJIN2 using the Build mappy on macOS ARM
#46
akikuno
closed
4 months ago
3
Enhance Alignment Accuracy for Short Reads by Integrating `map-ont` and `splice` Options
#45
akikuno
closed
4 months ago
1
Develop 0.5.2
#44
akikuno
closed
4 months ago
0
Test with Python 3.11 and 3.12
#43
akikuno
closed
4 months ago
2
Incorrect Insertion Allele Judgement for Matched Sequences within Large Deletions
#42
akikuno
closed
4 months ago
0
Develop v0.5.1
#41
akikuno
closed
5 months ago
0
Develop v0.5.0
#40
akikuno
closed
5 months ago
0
An error occurs if there is an "_" in the FASTA header name.
#39
akikuno
closed
5 months ago
1
Add tests to `utils.cssplits_handler.insertion_within_deletion`
#38
akikuno
closed
5 months ago
1
Test for Dorado basecaller
#37
akikuno
closed
5 months ago
3
DAJIN2 reports extremely low-frequency alleles (e.g. 0.005%)
#36
akikuno
closed
6 months ago
1
GUI implementation
#35
akikuno
opened
6 months ago
3
Replace setup.py to pyproject.toml
#34
akikuno
closed
5 months ago
3
Improve Handling of Sequence Error Deletions within Large Deletions
#33
akikuno
closed
4 months ago
1
Add VCF reports
#32
akikuno
opened
6 months ago
0
Add a detection method for unintended inversion
#31
akikuno
opened
6 months ago
3
Develop 0.4.6
#30
akikuno
closed
6 months ago
0
Develop 0.4.5
#29
akikuno
closed
7 months ago
0
Develop 0.4.4
#28
akikuno
closed
7 months ago
0
Develop-0.4.4
#27
akikuno
closed
7 months ago
0
genome_fetcher.py error
#26
takeiga
opened
8 months ago
4
Develop 0.4.3
#25
akikuno
closed
8 months ago
0
two more errors in execution (one fixed)
#24
takeiga
closed
8 months ago
9
AttributeError: module 'wslPath' has no attribute 'is_windows_path'
#23
takeiga
closed
8 months ago
4
0.4.2
#22
akikuno
closed
8 months ago
0
Develop 0.4.1
#21
akikuno
closed
9 months ago
0
Develop 0.4.0
#20
akikuno
closed
10 months ago
0
Develop 0.3.6
#19
akikuno
closed
10 months ago
0
Develop 0.3.5
#18
akikuno
closed
11 months ago
0
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