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akikuno
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DAJIN2
🔬 Genotyping tool for genome-edited samples, utilizing nanopore sequencer target sequencing
MIT License
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Test with Python 3.11 and 3.12
#43
akikuno
opened
1 week ago
2
Incorrect Insertion Allele Judgement for Matched Sequences within Large Deletions
#42
akikuno
opened
1 week ago
0
Develop v0.5.1
#41
akikuno
closed
1 week ago
0
Develop v0.5.0
#40
akikuno
closed
3 weeks ago
0
An error occurs if there is an "_" in the FASTA header name.
#39
akikuno
closed
3 weeks ago
1
Add tests to `utils.cssplits_handler.insertion_within_deletion`
#38
akikuno
closed
3 weeks ago
1
Test for Dorado basecaller
#37
akikuno
closed
1 week ago
3
DAJIN2 reports extremely low-frequency alleles (e.g. 0.005%)
#36
akikuno
closed
1 month ago
1
GUI implementation
#35
akikuno
opened
1 month ago
3
Replace setup.py to pyproject.toml
#34
akikuno
closed
3 weeks ago
3
Improve Handling of Sequence Error Deletions within Large Deletions
#33
akikuno
opened
1 month ago
0
Add VCF reports
#32
akikuno
opened
1 month ago
0
Add a detection method for unintended inversion
#31
akikuno
opened
1 month ago
1
Develop 0.4.6
#30
akikuno
closed
1 month ago
0
Develop 0.4.5
#29
akikuno
closed
2 months ago
0
Develop 0.4.4
#28
akikuno
closed
2 months ago
0
Develop-0.4.4
#27
akikuno
closed
2 months ago
0
genome_fetcher.py error
#26
takeiga
opened
3 months ago
3
Develop 0.4.3
#25
akikuno
closed
3 months ago
0
two more errors in execution (one fixed)
#24
takeiga
closed
3 months ago
9
AttributeError: module 'wslPath' has no attribute 'is_windows_path'
#23
takeiga
closed
3 months ago
4
0.4.2
#22
akikuno
closed
3 months ago
0
Develop 0.4.1
#21
akikuno
closed
4 months ago
0
Develop 0.4.0
#20
akikuno
closed
5 months ago
0
Develop 0.3.6
#19
akikuno
closed
5 months ago
0
Develop 0.3.5
#18
akikuno
closed
6 months ago
0
Develop 0.3.4
#17
akikuno
closed
6 months ago
0
Develop 0.3.3
#16
akikuno
closed
7 months ago
0
Develop v0.3.2
#15
akikuno
closed
8 months ago
0
Develop v0.3.1
#14
akikuno
closed
10 months ago
0
develop-v0.2.5 (actually, 0.3.0)
#13
akikuno
closed
10 months ago
0
bump v0.2.4
#12
akikuno
closed
1 year ago
0
bump version 0.2.4
#11
akikuno
closed
1 year ago
0
update `extract_errors_in_homopolymer`
#10
akikuno
closed
1 year ago
0
update `extract_mutation_loci`
#9
akikuno
closed
1 year ago
0
Multiprocessing
#8
akikuno
closed
1 year ago
0
debug `clustering._extract_cssplits_in_mutation_by_3mer` and `make_score`
#7
akikuno
closed
1 year ago
0
update `_extract_anomaly_loci`
#6
akikuno
closed
1 year ago
0
- Changed `correct_sequence_error` algorithm
#5
akikuno
closed
1 year ago
0
update to correct homopolymer deletions
#4
akikuno
closed
1 year ago
0
update `correct_sequence_error` to avoid classified large deletion alleles as `inversion`
#3
akikuno
closed
1 year ago
0
some request for help
#2
chengarthur
closed
1 year ago
2
midsmask：最大頻度の塩基でマスクする方法では、ヘテロがホモになってしまう。
#1
akikuno
closed
2 years ago
0