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**Add function for plotting phylogenetric trees**
----
Use turtle to generate a phylogenetic tree from a distance matrix
This is a speed optimization - directly reference position
instead of searchi…
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**This does not handle gap characters**
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Zeros in first row and first column
Max value in last row or last column is end of alignment
srp = re.search(r'(?= {scorethr}
AND mirna IN (…
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I'm getting an issue when running a simple test script
```python
from mordecai import Geoparser
geo = Geoparser()
geo.geoparse("From Ottowa to Beijing.")
```
This is the error:
, and specified versions of the dependen…
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I'm working on Ubuntu 18.04. I'm trying to install Docker. But whenever i run this command "sudo add-apt-repository \
"deb [arch=amd64] $DOCKER_EE_URL/ubuntu \
$(lsb_release -cs) \
stable-…
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**Describe the bug**
Am having a lot of trouble to implement the whole circos app on windows.
I can't install the dash-bio-utils.
Having an issue for installing parmed
**To Reproduce**
Steps to r…
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Issue Type: Bug
Open any file.ipynb and attempt to run a cell.
print('hello')
expect output : hello
receive: 'Error: Direct kernel connection broken'instead with the following detai…
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@conda-forge-admin, please add bot automerge
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### Context
I ran into this yesterday while trying to find reference data for the illumina tests.
### Problem or idea
An exception gets thrown when surveying GSE56080:
```
OSError: Download…
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```
>>> import pygeonlp.api as api
>>> from pygeonlp.api.devtool import pp_geojson
>>> import jageocoder
>>> api.init()
>>> dbdir = api.get_jageocoder_db_dir()
>>> jageocoder.init(f'sqlite:///{d…