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Hi,
I was wondering if there are surface files (such as giftis or freesurfer surfs) for the volumetric MNI templates. I've seen some in various packages but I haven't come across an archive that co…
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### Issue summary
(Posting here for traceability)
Vertex values of large swathes of cortex appear to not be reassigned in null maps generated by the `neuromaps.nulls.alexander_bloch` method, resul…
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As far as I can tell, running fMRIPrep v1.5.0 with `--output-spaces fsaverage:den-41k` does not yield the expected GIfTI outputs with 40,962 vertices. It yields files named `sub-*_task-*_space-fsavera…
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Take as input (assumed clean-ish) .nii or .nii.gz files, and make correlation/covariance matrices. See fmri_to_matrix and timeseries_to_matrix
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A user requested the function of running searchlight on surface space, which pyMVPA offers (http://www.pymvpa.org/examples/searchlight_surf.html). @snastase says he is familiar with the module in pvMV…
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This is just an idea, and I'd like to hear feedback @akhanf @royhaast @myousif9 @Bradley-Karat
I was thinking it might be nice to concatenate label-`hipp` and `dentate` output files (they would st…
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Hello,
I have a few questions about applying this code to my data.
The documentation says the usage is:
./x_gradient.sh PathToFile/
What is the procedure for creating the file, and w…
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I use the following code,
`vol_data = cortex.Volume(np.moveaxis(np.moveaxis(test_data,0,-1),0,1), subject, xfm)
cortex.quickflat.make_figure(vol_data,recache=1)
plt.show()`
But I do not get the ni…
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- why isn't the indexing based on the underlying format again ? [jb tentative response: because two different backends will lead to 2 different meta data json files ? yet another reason to keep backen…
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Hello,
I am attempting to run a group GLM of subject level results. For each subject (M=68), I have the `_left.rds`, `_right.rds` and combined `.rds` file saved out from the subject-level run. Each…