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Hi,
I am trying to run the HMRF on some data for which I have the raw expression matrix and the spatial locations as .csv files. I am basically running the following:
```
raw_matrix
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I am having trouble with clustering my Giotto data, either with doLeidenCluster, doLouvainCluster or clusterCells. I have inputed the code proposed in tutorials for Visium datas and whenever i get to …
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@bernard2012, thank you for releasing the new version of the Giotto viewer docker. I was trying to download the pre-generated annotation files testviewer_annotations which fails to downloaded. I also…
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I used spatPlot() function and I got the result turned 90 degrees to the left.
I extracted counts matrix and location matrix from Seurat object.
I attached my code below. Let me know if there's a so…
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**Is your feature request related to a problem? Please describe.**
From #654 we know that it is possible to install giotto-tda without sudo, but only if there is a pre-built wheel. The latest Pyt…
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HI Giotto team,
In the current protocols paper - the downstream giotto analysis comprised of cellcell interaction -- this is built upon HMRF inferred data from deconvoluted spatial samples correct…
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Hi,
I get the Giotto object by
`giotto_st.RNA
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Hi team,
Thanks for the great package and all the useful tutorials for different types of spatial data!
I have been following the manual for the CosMx data and faced some errors/issues, leading to …
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#### Description
In the current implementation of `diagrams.Scaler`, `Amplitude` and `PersistenceEntropy`, homology dimensions that don't appear in `fit` will not be considered in `transform`.
…
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Hello!
I am tying to work with sphinx-toolbox and unfortunately I am receiving a fatal error when trying to run my build :
Handler for event 'config-inited' threw an exception (exception: The…