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## Context
As part of our efforts to merge the GTFS Best Practices into the spec, we are:
1. migrating the current Best Practices into the spec based on community consensus ([plan for Schedule](http…
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I have used identical RNA-seq data and protein sequences as inputs for the BRAKER to predict gene models for eight different varieties of the same species.
However, the number of gene models produce…
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### Describe the problem
Real time prediction tools could use additional information to describe what type of vehicle is approaching and its capacity and accessibility features.
### Use cases
…
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Originally identified by @SergioRec in #248, context below. To reproduce the error, I used `GtfsInstance` on the chester test fixture. Using `html_report(extended_validation=True, clean_feed=False)` s…
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Name: GTFS to Beckn Converter
Title: "Need a User Interface for Managing GTFS files."
Labels: C4GT Community
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## Description
Problem
Today any mobility service that has its sched…
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Using GTF files from GENCODE, I get the following error:
> cerberus gtf_to_bed --gtf gencode.v45.annotation.gtf -o gencode.v45.annotation.out --mode tss
Exception: Cannot compute TSSes or TESes …
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### Description of the bug
unzipping of fasta and gtf files fail, when I provide a relative path to those files. I can work around by either unzipping the file first, or by providing an absolute path…
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Hi! I reached out to Mikołaj Kuranowski, who compiles GTFS feeds for Polish public transport services: https://mkuran.pl/gtfs/ . He OKed use in Transpotr, but said that the process feels to complicate…
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In my RNAseq there's a novel isoform (extended exon) which is not detected by ESPRESSO. (See BAM file with ESPRESSO gtf below). Only two reads are visible supporting the isoform, but there are actuall…
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**TL;DR: we propose to officially harmonize the name GTFS-Static**
**Issue Description:**
There has been a longstanding debate surrounding its naming conventions, particularly concerning the ter…