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Artificially modifying the color space of the image can have a negative impact for some applications. Can this be made optional?
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Hi Johannes,
When running S2V with the attacched parameters, the Output Stack doesn't fit the atlas I registered my histological images to (image attached). The output stack seemes to be much smaller…
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I'm getting checksum errors from hatrac on several versions of a hatrac object that was migrated from www.gudmap.org to www.atlas-d2k.org last year. The files that transferred successfully all have le…
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Hello mlampros,
thanks for the implementation of SLICAP in R. I am wondering if it is possible to force the number of clusters/masks.
An example:
I am using `$spixel_segmentation()` with `adju…
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Is there any easy way to implement ROIs into the pipeline to segment within predefined areas? Thanks so much!
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Just wanted to know if anyone was able to test this technique on medical image and arrive at promising results.
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Data are here: https://osf.io/8k7jr/
Paper: https://pubmed.ncbi.nlm.nih.gov/30326296/
Todo:
- bring the atlas in the same coordinate space as the PAM50
- maybe generate a subsampled version? (or…
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I have 10X Visium data for a spatial transcriptomics project.
Although I'm able to use the spatial coordinates for the cellxgene embedding, I'm not able to put the image on it to co-zoom with the spo…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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https://mp.weixin.qq.com/s/WZ32uGWJulqul3upymOU9g