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- [ ] Obtain datasets for SARS-CoV-2, HIV-1 and the human genome
- [ ] Align sequence databases - MAFFFT?
- [ ] Theta - Watterson's, Pi, lamarc, BEAST
- [ ] Analyze results - significance between s…
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## Problem statement
As we get ready to start migrating Senders over in the next quarter, we need to identify the content/artifacts that need to be created or updated for sender outreach.
## What yo…
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Following our discussion with @nekrut , I am creating an issue to outline essential components for creating a barebones HIV (or other short RNA virus) genomic analysis pipeline.
Key steps for ampl…
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**THIS IS FROM THE ORIGINAL ANALYSIS. FOR UPDATED SCENARIOS/REVISIONS TO SCRIPTS, SEE COMMENT BELOW**
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Scenarios
- Historical (up to 2020):
- baseline screening with cytology age age 35 up t…
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Currently there is some (simplified & heavily dummied) transmission code
- viral load groups for partners are just randomised currently; they should be calculated from the population statistically
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It's a bit confusing that users pass in modules in `pars.diseases.hiv`, but during `Sim` initialization, the modules are all popped from the `pars` dict and then added back to the pars via `Module.ini…
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Hi Ivan.
A couple more questions!
First are about the predictNQX and error.svd functions. Can we get some information on them to add to the documentation? At the minimum, who is the author a very s…
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We need to add the ability to health workers to navigate to the health care library to learn more about the care protocols and procedures ie to https://drive.google.com/drive/folders/1L0yg8qIyrcW4DJe…
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Hello, I would like to ask what does this error mean and how will I solve this error?
Activating conda environment: .snakemake/conda/0a11ef3f67c5c382159134f72bbed3ac_
ERROR: Count argument '2-tes…
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