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When creating a FilteredComplex from scratch by giving the simplices, indices and filtration values for a triangulation (with one hole for some time), there can appear superfluous persistent 1-cycles…
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Hi, thank you for making the pipeline!
I am currently trying to run concat_by_homology_multiple_species.nf with some sample data but have been getting an error, (command.sh: line 2: python: comman…
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`chr1 225835501 Minda_5 N . PASS SVLEN=95637;SVTYPE=DUP;SUPP_VEC=PB_severus_DUP505,ONT_severus_DUP521,PB_r_26,ONT_ID_7202_2,ONT_r_16,PB_ID_4522_2
`
https://v2.genomeribbon.com/?session=https://42bas…
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## Expected Behavior
I am trying to partition 25000 sequences by homology so identical sequences (for instance >30%ID and >70%coverage - ideally even lower coverage if possible) are grouped into the …
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Hi Chris,
here some examples of multiple organs not related by homology links, instead just mapped together
UBERON:0007798, UBERON:0002049
vascular system, vasculature
PORO:0000018, UBERON:00001…
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I'm looking for a faster alternative to Diamond for aligning proteins to UniRef50 so I can map identifiers to de novo proteins.
Can I use this tool to accomplish this task?
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Hi team,
Great work!
Just wonder instead of having to download the big Uniclust30 and PDB70, its it possible to run the "Multiple initial models mode" using one or two user-defined PDB crystal s…
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Greeting,
Hope you can fix this issue - you have fixed it before.
Observed: today and last week also
Thank you for looking into it!
Sveta
Blast failed /disks/p3/deployment/services/homology…
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I've been developing a metagenomic/metatranscriptomics software suite called VEBA (https://github.com/jolespin/veba) that natively handles eukaryotic binning of metagenome-assembled genomes and exon-a…
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`chr3 139976414 Minda_96 N N]chr13:114353243] . PASS SVLEN=-1;SVTYPE=BND;SUPP_VEC=ILL_MantaBND:2:46148:55281:0:1:0:1,PB_r_90_0,ONT_r_77_0,ILL_gridss63ff_2860h,PB_severus_BND1941_1,ONT_severus_BND2144_…