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Dear author,
As the title, is there any function in CIRI-long to catch isoforms' counts ?
Or how could I get isoforms' counts instead of circRNA-genes' counts ?
Thanks a lot.
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Hi team,
I have recently run sqanti3 with fasta as input, and the result table contains some duplicate isoforms.
I had a quick check and found it stems from the `corrected.gtf` file first, which …
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Implement the `HeaviestBundle` algorithm described in Lee _et al._ (2003) to generate consensus sequences for a POA graph.
Can also be used to obtain RNA isoforms.
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Dear Nicolas,
I have tried to run UNAGI on my own nanopore data. I run it successufully without error.
However, I cannot got the strand infomation in the final output (both 'Splicing_Isoforms.bed…
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After the removal of the position markers (#1464) we decided to evaluate how to make the sequence viewer more user friendly. On strategy could be to adopt the uniprot way of showing sequences. But its…
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Apparently we're not reading these in, though we do read in the protein's annotated modified residues. It may or may not be a good idea to read in all SNVs, etc. but maybe we should provide options to…
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1. Remove readthrough from the gene-centric (GCRP) and keep them in the reference proteome (as additional isoforms)
2. Talk to HGNC and Ensembl about external isoforms (should these be annotate…
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Hello :
We employed DIA-NN 1.8.1 to obtain results for the same data on different platforms (Windows / Ubuntu), and all processes were completed without any errors. Nevertheless, we discovered some…
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Depends on some extent on the ProteinBoxBot
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I’m experiencing **Error executing process > 'pipeline:makeReport (1)'** this same issue across multiple versions. I’ve tried various versions, starting from the lowest to the newest wf-transcriptomes…