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broadinstitute
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poasta
Fast and exact gap-affine partial order alignment
BSD 3-Clause "New" or "Revised" License
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unknown feature `stdsimd`
#22
grenaud
closed
3 months ago
2
feat: move serde serialization behind the `serialize` feature flag
#21
lavafroth
opened
3 months ago
0
Fix computing too much states than necessary and current quadratic (or even exponential) behaviour with increasing alignment score
#20
lrvdijk
closed
9 months ago
1
Make serde serialization support optional and behind a cargo feature flag
#19
lrvdijk
opened
1 year ago
0
Support reading FASTQ and use base quality weights in the alignment
#18
lrvdijk
opened
1 year ago
0
Create better graphviz/dot visualizations
#17
lrvdijk
closed
3 months ago
1
Create a `view` CLI subcommand that allows for conversion of different file formats
#16
lrvdijk
closed
6 months ago
0
Output consensus sequence for a POA graph
#15
lrvdijk
opened
1 year ago
2
Output a row-column MSA as FASTA from our POA graph
#14
lrvdijk
closed
6 months ago
1
Serialize graph to disk with Serde
#13
lrvdijk
closed
1 year ago
0
Implement WF-Adapt heuristic to prune wavefronts
#11
lrvdijk
closed
3 months ago
0
Implement other alignment modes (e.g., glocal, ends-free, etc.)
#10
lrvdijk
opened
1 year ago
0
Better optional support for tracking the aligner state, saving data that could be used for plotting and debugging
#9
lrvdijk
closed
1 year ago
0
Option to write alignments to Graph Alignment Format (GAF)
#8
lrvdijk
opened
1 year ago
0
Write graph to GFA
#7
lrvdijk
closed
6 months ago
0
Organize code in a separate CLI and library crate
#6
lrvdijk
closed
1 year ago
0
Add ability to read an existing MSA in tabular FASTA format
#5
lrvdijk
closed
1 year ago
0
Create unit tests for the alignment algorithm
#4
lrvdijk
opened
1 year ago
0
Create unit tests for adding sequences/alignments to a graph
#3
lrvdijk
opened
1 year ago
0
Create test data sets
#2
lrvdijk
closed
1 year ago
0
Create CLI to align sequences in a FASTA file
#1
lrvdijk
closed
3 months ago
1