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Hello! Thank you so much for developing & maintaining a great tool :)
Could you please help me figure out why I had to replace NaN values for "Seurat_cell_type" to "Unknown" ?
Following the pyci…
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*Issue first reported in https://github.com/checkstyle/checkstyle/issues/10020#issuecomment-893156100*
*First analysis done by @Abhishek-kumar09 : https://github.com/checkstyle/checkstyle/issues/1002…
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I want to thank you for your interactive responses to all the published issues and the various codes that you provided. Thanks to your assistance, I successfully ran the pipeline on 16S data.
Curr…
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When running the "annotate" step in enrichm of the latest version (installed via conda), ERROR happened as below.
[2019-08-17 15:04:12 PM] INFO: Running command: /data/software/miniconda3/envs/enr…
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Hello,
I've been running the most recent Dockerized version of Trinotate. I completed steps 2, 3, and 4 as seen in https://github.com/Trinotate/Trinotate/wiki/Software-installation-and-data-require…
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We are trying to incorporate more detailed metadata into our builds. Currently there is no standard for build tool information to be surfaced.
Rather that create a vendor specific annotation
```
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In my results I have the genes that go with cp12 (calvin cycle inhibitor) but I don't see cp12 in the annotations. However, I do see it in the virsorter affi contigs file. Is cp12 difficult for the da…
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Hi!
I have mapped my sequencing reads against the [IGC database](https://db.cngb.org/microbiome/genecatalog/genecatalog_human/) (nucleotide sequences), and wanted to run Omixer-RPM using the [GBM D…
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Hi, kofam_scan_colleagues:
Recently, I run the kofam_scan software using the following command line:
exec_annotation -o 5k+_assembled_hits_to_vHMMs_ko.txt 5k+_all_assemblied_contigs.part_329_p…
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您好,感谢您的工作!我看您文章中附录B.3章节介绍关于如何计算KO/KOP/QT+KO-specific 相关的互信息那段描述中的提及了,_**KO: All objects (81 kinds of objects in total) appear in the images are provided in the VQA v2 annotation.**_,我想请教一下,您这里提及的VQAv2…