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To draw regional association plot for the lead variant of each replicated loci, we need to update the LocusZoom SQLite database to show the recombination rate and it hotspots in the plot for SNP with …
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`lz-aggregation-tests.min.js` is possible to plot burden test by `raremetal.js`, however it is too slow for big data.
Regenie is good for calculating UKB data for burden test, so is this possible f…
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Hello,
I am posting this here because I am not sure of the most appropriate contact for this. Please let me know if I should be directing this concern to another source.
I noticed that the Unive…
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While running
nextflow run qc -profile docker I am having the following problem
I am using a Mac terminal
**raise AttributeError("module {!r} has no attribute "
AttributeError: module 'numpy' ha…
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Dear Peter and guys:
1. I think these days most GWAS don’t have REF and ALT that “must match reference genome” (required by pheweb). Also, I think in the long run, this idea of “REF” allele in t…
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Hi,Yunye, I had a question about regional plot. As is shown is the below figure, I found that plot_mqq function will find lead variant (SNP X)automatically in this chunk of genome. But I am intereste…
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Dear [Anael](https://twitter.com/YahiAnael),
trying to reproduce your analys…
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Hello,
Thank you for developing this package! It has been a valuable resource, and I am interested in applying it to our binary trait analysis. However, I have encountered an issue regarding the i…
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As developer
I want an api endpoint
So that when I send a GET request, hateoas, paginated list of all associations associated to a given Efo Trait in the database is returned in JSON Format
Managemen…
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Hi Bernat!
Thanks for the publishing this powerful visualization package. It has been quite a lot useful and easy to use than LocusZoom.js and ggbio, honestly. I had query if I can plot kpLines on…