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I am currently trying to import mass spec imaging data by converting this to a .h5 to mimic the Visium file formatting. I have reached a point where the error is: ValueError: Versions older than V3 ar…
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I'd love to read more about how this tool is being used, but I'm blocked from accessing the paper describing it:
Colby, S.M., Chang, C.H., Bade, J.L., Nunez, J.R., Blumer, M.R., Orton, D.J., Bloods…
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@conradbessant @saha-shyamasree
Under Mass-Spectrometry Data Statistics, what sort of information do we want to add about PSMs? (http://localhost:8080/tge?accession=TGE000001)
for example: Number of …
eaHat updated
8 years ago
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It would be nice if a tool for visualizing the results from Mass Spectrometry and peptide matching experiments.A tool which can visualize and show a list of peptide matches which can run from OpenMS. …
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The very formulaic language
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Hi,
this is mainly a reminder that we (e.g. @achimmiri) are facing duplicated peaks in a record.
The `PK$ANNOTATION` might have multiple formulae, and then the `PK$PEAK`
are also duplicated. I thin…
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Dear colleagues,
https://www.ebi.ac.uk/ols/ontologies/ms
It seems that something is not right because in the first hierarchical level of the ontology, many terms from the ontology (which should …
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PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data
https://doi.org/10.1021/acs.jproteome.0c00958
https://github.com/saezlab/PHONEMeS-ILP
From the…
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**MIBiG ID**
BGC0002135
**Short summary**
I'm adding one more molecule produced by this pathway.
Bovienimide B
CCCCCCCCCCCCCC(N[C@H](CC(C)C)C(N[C@@H](C)C(N[C@H](CCCNC(N)=O)C(O)=O)=O)=O)=O
…
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is there mass-spec data in cptac? otherwise https://www.ebi.ac.uk/pride/archive?keyword=cancer has a lot and probably a good thing to combine with?