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Greetings,
I have the following error from Validator, which I do not understand:
```
Jewell@r:~/MassBankEurope/MassBank-data$ ./.scripts/validate.sh BfG_Koblenz/
Validator version: 2.1.8
07:12:39…
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PHONEMeS: Efficient Modeling of Signaling Networks Derived from Large-Scale Mass Spectrometry Data
https://doi.org/10.1021/acs.jproteome.0c00958
https://github.com/saezlab/PHONEMeS-ILP
From the…
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**Describing the issue**
I'm using MetaMorpherus for O-glycopeptide search and facing an issue. Regardless of whether I include 'spectrumLibrary.msp' in the databases, the results remain unchanged. M…
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I have just read the paper cited at the end, and it convinced me about the potential of monolinks as a source of experimental information regarding surface accessibility. As suggested there, this may …
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The very formulaic language
```
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It would be nice if a tool for visualizing the results from Mass Spectrometry and peptide matching experiments.A tool which can visualize and show a list of peptide matches which can run from OpenMS. …
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Subtags for Analytical Condition etc should be ALL_CAPITALS_WITH_UNDERSCORE_SEPARATION to be consistent with the other record entries. "PeakWidth" => "PEAK_WIDTH" and this would need a unit. "Column" …
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Currently "Deconvolution" is an exact synonym to Deisotoping (http://edamontology.org/operation_3629), which is highly related to proteomics/mass spectrometry. However, Deconvolution is also found in …
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When using the OBI lookup service for terms relevant to targeted/untargeted metabolomics and proteomics assays used in MoTrPAC data, I wasn't able to find the terms for the following:
```
Targeted 3…
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Reported by Dzmitry Mukha:
> When I used getMass(getMolecule("C89H176O16P2")) in the Rdisop, I have got drastically wrong
> monoisotopic mass with >1 Da difference. The result is also significant…