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Hello,
I have been trying to run masurca but I keep running into the same error. After modifying the configuration file I manage to create the assemble.sh, however when I try to run `masurca assse…
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Checking out the latest version 3.2.6b and building it at Ubuntu 16.4 produces the following error:
```
make[2]: Entering directory '/mnt/soft/masurca/build/global/MUMmer'
YAGGO tests/generate…
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Hi
im trying to make hybrid assembly for Ecoli using MiSeq and Nanopore data in Masurca. currently i m getting two errors marked in Bold bellow. my MinION fastq files should be OK, no idea why im …
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Hi, We are working with a parasite and we have data from a IonTorrent and a PacBio (So, no illumina reads). Could be possible to use masurca with IonTorrent + PacBio ?
Thanks in advance
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Hi,
Been running the pipeline and get the following error for FRCBAM and REAPR, however I'm mostly interested in REAPR and can't quite find out the problem. It is installed in Utilities/cpp/Linux-x…
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Can MaSuRCA be used for transcript assembly?
Thanks very much!
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Hello,
I've used MaSuRCA for an assembly composed of paired end and "real mate pair" (after nextclip process, cat A,B and C).
Then I've estimated my insert size mate pairs with Picard.
I got strange…
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Something like params.asssemblytool. The value could be megahit or masurca.
You should create an assembly process for each tool and then make the execution of the assembly process conditional on …
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Hello,
We are making a hybrid assembly with MaSuRCa, we have launched it twice changing some parameters of the configuration file, both times it has stopped because of the same failure in the creat…
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Hi,
I run Masurca, specifying to run the hybrid assembly on the grid.
Everything went fine and I obtained no error message and the mr_pass1 folder was created.
Then I rerun the assemble.sh, but n…