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Hello,i an sorry to bother you.I have 9 phenotypes data during GAPIT for GWAS analysis.But during the process of performing the analysis,it should just associate the phenotypes of the first PH and the…
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nichenet_output_agnostic
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### Project short name:
MetastaticLUADReprogramming
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/19DQaa_vy…
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Would there be any interest in a "special array" transformation to create loading matrices for factor analysis? i.e., when `n` observed variables are represented by `m
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Hello,
I was trying to cluster two trajectories using the command:
`ttclust -f 1_SS_Unglycosylated-T1/step7_production-500ns.xtc 1_SS_Unglycosylated-T2/step7_production-500ns.xtc -t top.pdb -st "pro…
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Hello expert,
I am trying to upload a SARIF file generated by a trivy scan. Whereas the SARIF file is generated, the upload of the file in the security tab failed with the message:
```
Run github…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/AlmogAngel/xCell2
Confirm the following by editin…
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我已经跑完流程,得到了raw_matrix文件夹,我现在想自己进行从头的质控以及后续一系分析。但是我是进行了很多尝试使用 scanpy 读取总是会报错?不知道是否支持?
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**# When I run T-DESEQ2 in bulk RNA sequencing analysis.**
treatment_groups=['4-3','4-4']
control_groups=['1--1','1--2']
result=dds.deg_analysis(treatment_groups,control_groups,method='DEseq2')
…
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Hi,
I have two questions:
1. I have a scRNA-seq dataset with 3 batches and I want to simulate a spatial dataset preserving the batch effect, is it better to simulate each batch separately or direc…