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when I run this step ,I get:
mcell_add_gene_stat(gstat_id="test", mat_id="test", force=T)
Calculating gene statistics... will downsamp
done downsamp
will gen mat_n
done gen mat_n
done computing…
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From 2/5 IDP meeting:
TNP SARDANA planning to submit data to DCC - ready, just need to complete metadata; check with Alyce and Madison on timeline for this
- Someone is working on stories for m…
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Why arent all files listed when running
```bash
!kaggle competitions files siim-isic-melanoma-classification
```
Im creating a script that would fetch one file at a time and save it to S3, becau…
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Hi, authors,
Thank you for you work for explainable AI in dermoatology filed. Currently I am reproducing your result in multiple downstream tasks. I tried to dive into a [notebook](https://github.c…
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The function is throwing an error for queries that previously worked (as is the case for documentation example):
`clinicaltrials_search(query = c('recr=Open', 'type=Intr', 'cond=melanoma'))
Error …
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https://www.nature.com/articles/s41588-019-0440-9
- [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy this che…
jjgao updated
2 years ago
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Hi, @jeremykawahara, @hamarneh!
Can you explain how we calculate AUCROC for diagnosis? AUCROC is for binary classification, how can we interpret this for multi-class classification (because 1 diagn…
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User reported: https://groups.google.com/u/1/g/cbioportal/c/T-QlXI66WRU
Querying for TERT:DRIVER in GENIE can result in an alteration frequency >100% (see Desmoplastic Melanoma here: https://genie.…
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[Serana F, Sottini A, Caimi L, Palermo B, Natali PG, Nistico P, Imberti L. Identification of a public CDR3 motif and a biased utilization of T-cell receptor V beta and J beta chains in HLA-A2/Melan-A-…
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Hello,
I'm executing `smoove call` to process a pair of WGS bam files. I'm following instructions provided in the documentation, however, the tool fails early when executing `lumpy-filter`:
```
…