tanaylab metacell issues

tanaylab / metacell

Metacell - Single-cell mRNA Analysis

https://tanaylab.github.io/metacell

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metacell requires package that doesn't exist

#94 yonatans2 closed 1 month ago
0
mcell_mc2d_plot bug

#92 Ray569743422 opened 8 months ago
1
Error in mcell_add_cgraph_from_mat_bknn / tmp permisson denied

#91 JHyang0210 opened 8 months ago
0
function `tgs_cor_graph()` is missing in package

#90 TimelikeTachyon opened 9 months ago
1
Error Occured when Running metacell Usage Guide Page

#89 TimelikeTachyon opened 9 months ago
2
a lot of metacells have no similarity

#88 yigerenbenpao opened 9 months ago
0
Fixes while condition to avoid error with R (>4.2)

#86 pujaltes closed 1 year ago
1
mcell_mc_hierarchy while condition

#84 baj12 opened 1 year ago
1
dysfunction and activation score

#83 abedkurdi opened 1 year ago
0
install scdb, download test

#82 Jungkooklove0901 opened 1 year ago
0
fixed documentations for genes coverage selection

#81 tomgome closed 1 year ago
0
Batch

#80 Sayyam-Shah closed 1 year ago
0
Log Transformation

#79 Sayyam-Shah closed 2 years ago
0
mcell_mc_plot_marks creates incorrect annotation colorbar when using focus_mcs

#78 orimosko opened 2 years ago
0
Question: Assign a metacell

#77 annrosebright opened 2 years ago
1
Can't download the tutorial data

#75 f6v closed 2 years ago
2
Coudn't install metacell on windows

#74 zyb1984 closed 2 years ago
1
comp mc graph using the graph RGdb_50_graphs and K 20 Error in confu/csize2 : non-conformable arrays

#73 ramvinay opened 2 years ago
1
install issue

#72 kimheeeeee closed 2 years ago
1
mcell_add_gene_stat

#71 chenx9 opened 2 years ago
3
Fixed type of default value for outliers in tgMCCov

#69 ofirr closed 2 years ago
0
code error in gstats.r

#68 saynHuang opened 2 years ago
1
Could we add the proteomic data into metacell

#67 zh-Bian opened 2 years ago
0
linear pipeline collapse with Error due to undefined variable 'marks_fn' used to coloring mc

#66 tomgome opened 2 years ago
0
Is it possible to get knn index file from Metacell?

#65 BW15061999 opened 2 years ago
0
mc2d_force_knn fails if mc wasn't colorized beforehand

#64 tomgome opened 2 years ago
1
How to get the actual raw cells behind a metacell?

#63 chansigit opened 2 years ago
3
can we get figures directly instead of checking the output file?

#62 chansigit opened 2 years ago
0
Build metacell using features resulting from dimension reduction methodse.g. principle components

#61 myylee opened 3 years ago
0
Error in `mcell_mc_plot_hierarchy`

#60 tomgome opened 3 years ago
0
e_gc colnames are not upadted in mc_set_outlier_mc

#59 yaniv-el closed 3 years ago
0
Installation RSvgDevice dependency error

#58 CFeregrino closed 3 years ago
3
import .h5ad or .loom formats

#57 AAleotti opened 3 years ago
3
How to deal with data with clear batch effect?

#56 hurleyLi closed 3 years ago
3
`scm_merge_mats()` error when setting slots to `NULL`

#55 anamariaelek closed 3 years ago
2
Fix@coclust filt by k

#54 akhiadber closed 3 years ago
0
How to extract list of genes in a metacell

#53 AAleotti closed 3 years ago
4
A minor issue with gset_import_table

#52 LilithMary closed 3 years ago
2
mcell_mc_from_coclust_balanced error

#51 jleandroj closed 3 years ago
2
mcell_mat_rpt_cor_anchors error

#50 jleandroj closed 3 years ago
2
Function `mcell_mc_plot_by_factor` depends on undeclared parameter

#49 tzeitim closed 3 years ago
2
R kernel keeps dying when running mcell_mc_from_coclust_balanced()

#48 zhenzuo2 opened 3 years ago
7
Cluster assignment is produced for only a subset of the cells post QC

#47 asmagen closed 3 years ago
2
Plots won't show on RStudio

#46 jfp2127 closed 3 years ago
0
Assign id to metacell object

#45 amissarova opened 3 years ago
2
inconsistency of geometric mean calculation in paper and in code

#44 mingwhy closed 3 years ago
1
Unable to install MetaCell

#43 danmoore1987 closed 3 years ago
1
Error in mcell_plot_outlier_heatmap

#42 yonatans2 opened 3 years ago
0
`mcell_mc_split_filt` followed by `mcell_mc2d_force_knn` : length mismatch errror

#41 nixstix closed 3 years ago
5
Gene quantification in metacells

#40 nessa0389 closed 3 years ago
1