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Hi SP, following up on our Wednesday meeting...
As you read I would recommend discussing these, briefly, with me/Kendal/Kaizad/Vanessa...someone with a good soil background who can answer questions…
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HI,
I used vRhyme with the default settings on my assembled contigs. I concatenated contigs from the same bins into a single fasta file using the provided bin sequences.py script.Later, I used …
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In several cases when we have microbes that are associated to specific hosts...they should be displayed. Since an entity that is on one host is different than the the other but can be called the same…
hdliv updated
9 years ago
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# Critical Assesment of Metagenome Interpretation (CAMI)
CAMI is an open challenge for meta-omic's programs where the developers of said programs test out their programs on multiple different dataset…
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there appear to be a significant number of viruses, fungi and microbes that say on the PHA list that they match to a record, but when you click on the record you get either an error saying the record …
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Hi,
I was wondering if it would be possible to provide a filtering option based on assembly (species/assigned) name? I often want to pull a group of microbes with a general metabolic capabilities (…
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seeing if a sample is in the database / identifying if sample is there
differential privacy/dbgap search (at level of technical replicates)
biogeography - where might I look
discovering more …
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+ Quantify against CDS seqeunces
+ reasoning: microbes express polycistronic transcripts, but genomic rearrangements and other biology between strains makes it hard to have good references at the…
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https://en.wikipedia.org/wiki/Periphyton
_ a mass of biological material consisting of algae, cyanobacteria, heterotrophic microbes, and detritus that is attached to submerged surfaces in most aqua…
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The data source "Get Microbial data" (tools/microbial_import.xml) does not work per default because the the tool-data/microbial_data.loc is not populated. I guess this is fine, but information on how …