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...to get directly to data downloads in various formats
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Dear All,
I am totally new to R programming that I know is very powerful tool for statistical analysis.
I am trying to transfer data from QIIME to R using Phyloseq for analysis. My data is paired-end…
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- `depth2` is being deprecated in https://github.com/microbiomedata/nmdc-schema/blob/issue-486-data-to-7-0 (which will actually result in a new version of the schema, greater than 7.0.0)
- the releas…
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Dear all,
I did amplicon sequencing (16S) from woodchip bioreactors that were used to clean water contaminated with pesticides. I am very new to the field and I am still learning how to analyze the d…
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Dear Chen,
Thank you very much for creating this useful analysis tool.
I am starting to use the package to analyse my PICRUST2 result, however I have got this error in my analysis:
Error in ggpicru…
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Hello Jake,
would you be please so kind and help me with my problem? I'm trying to use your awesome tool for the visualisation of my data (microbial communities in bark beetles gut).
As long as…
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iHMP? or something else?
it'd be nice if it had a specific set of genome(s)... could do the hu et al one
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Hi,
I would like to create some barplots with calculated values of an absolute abundance.
I have a Phyloseq object with relative abundance values, created like this from a standard count table of il…
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Large impacts of small methane fluxes on carbon isotope values of soil respiration https://www.sciencedirect.com/science/article/abs/pii/S0038071718302013
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Hi! I was wondering if it is possible to incorporate environmental metadata into an analysis with spieceasi - it seems this would be quite important for getting an accurate network when dealing with d…